Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1493.4 773 100.0
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1323.1 786 86.9
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1291.9 778 84.8
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1285.4 780 84.6
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1233.4 776 81.4
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1230.3 785 80.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1224.9 776 81.4
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1222.2 772 81.5
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1219.9 743 84.1
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1211.8 760 83.2
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1211.4 742 83.3
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1211.1 756 81.6
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1209.9 773 80.7
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1208.0 781 80.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1206.0 779 79.8
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1203.3 699 86.6
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1203.3 738 84.1
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1202.2 762 81.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1201.4 780 79.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1201.0 781 80.0
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1199.9 779 80.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1195.6 794 79.8
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1195.3 774 79.6
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1193.3 778 79.4
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1190.6 722 84.6
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1190.3 771 79.8
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1189.9 747 81.8
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1189.1 794 79.7
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1186.8 763 81.0
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1185.2 755 81.9
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1182.5 818 75.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1181.4 778 79.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1180.6 755 80.3
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1179.9 730 82.7
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1176.8 779 78.2
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1176.8 773 79.9
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1176.4 779 78.9
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1174.1 730 82.6
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1173.3 762 79.8
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1172.9 735 82.0
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1168.3 769 77.8
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1166.4 771 78.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1160.6 755 78.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1157.1 718 82.5
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1157.1 763 78.2
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1156.7 788 76.5
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1151.3 779 77.8
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1149.0 776 78.5
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1146.7 762 76.6
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 0.0e+00 1142.9 833 72.5
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1142.1 707 82.5
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1129.4 812 74.0
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1122.5 787 74.5
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1122.1 711 81.0
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1119.0 774 75.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1118.6 785 74.8
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1114.4 734 77.1
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1114.0 800 73.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1107.8 759 76.4
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1107.4 789 74.1
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1103.2 768 74.7
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1103.2 768 74.7
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1098.6 785 73.8
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1097.8 713 77.7
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1092.8 784 73.9
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 0.0e+00 1088.9 771 74.1
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 0.0e+00 1087.4 650 84.6
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 779 75.6
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 0.0e+00 1078.5 687 80.3
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 775 73.9
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 5.3e-312 1074.7 730 75.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.1e-310 1069.7 730 75.6
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.2e-309 1066.2 753 74.1
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 2.6e-309 1065.1 676 81.5
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 5.8e-309 1063.9 787 70.8
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 7.5e-309 1063.5 787 71.2
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 2.9e-308 1061.6 757 75.3
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 8.3e-308 1060.1 779 73.0
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.4e-307 1059.3 773 71.3
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 4.6e-306 1054.3 788 70.9
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.3e-305 1052.7 789 70.6
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.7e-305 1052.4 780 71.9
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 788 71.1
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 3.0e-305 1051.6 780 70.8
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.1e-303 1045.4 759 71.3
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 788 70.1
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 4.7e-303 1044.3 780 69.7
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.8e-302 1042.3 789 70.3
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 1.7e-300 1035.8 787 69.6
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.9e-299 1032.3 734 72.3
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 5.4e-299 1030.8 783 70.1
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 7.1e-299 1030.4 783 70.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 2.1e-298 1028.9 788 69.8
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 2.1e-298 1028.9 788 69.8
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 701 76.0
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 1.0e-289 1000.0 742 71.6
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 3.4e-261 905.2 615 79.0
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.8e-247 858.2 529 80.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 2.4e-246 855.9 532 79.1
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.2e-243 845.5 728 58.9
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.6e-240 835.9 735 59.9
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 9.1e-238 827.4 731 58.8
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 2.5e-235 819.3 719 61.1
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 7.0e-230 801.2 716 59.5
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.9e-228 795.8 541 69.1
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.5e-219 766.9 531 68.4
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 7.5e-216 754.6 529 68.6
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.4e-200 702.6 518 65.6
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 6.8e-193 678.3 414 80.2
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.9e-179 633.6 403 79.7
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.6e-172 608.6 414 70.5
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 4.8e-154 549.3 343 79.9
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.6e-131 473.8 269 83.6
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.4e-105 387.5 689 36.4
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 7.2e-102 375.9 267 69.7
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 3.6e-101 373.6 491 42.8
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 9.8e-99 365.5 295 65.4
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.3e-98 365.2 621 42.4
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 1.6e-96 358.2 281 73.3
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.3e-71 274.6 351 48.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 5.6e-70 270.0 711 31.6
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 9.3e-41 172.9 99 79.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.8e-39 168.7 83 92.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.3e-31 142.5 138 57.2
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 2.3e-31 141.7 133 59.4
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 3.9e-31 141.0 108 66.7
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 1.1e-25 122.9 138 52.2
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 6.3e-21 107.1 54 85.2
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 3.2e-17 94.7 103 49.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 8.8e-15 86.7 62 67.7
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 3.1e-12 78.2 79 59.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 3.8e-10 71.2 74 56.8
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.5e-10 70.5 366 25.7
Actinidia37487 Actinidia chinensis HOM05D005554 ORTHO05D058019 6.1e-08 63.9 65 58.5
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.1e-08 63.9 80 47.5
Migut.J01799 Erythranthe guttata HOM05D008447 ORTHO05D010638 1.8e-07 62.4 316 24.7
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 5.2e-07 60.8 254 24.0
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 5.2e-07 60.8 256 24.2
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 5.2e-07 60.8 332 21.4
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 5.2e-07 60.8 85 41.2
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 6.7e-07 60.5 276 26.4
Nitab4.5_0001379g0110 Nicotiana tabacum HOM05D007982 ORTHO05D010255 8.8e-07 60.1 349 24.1
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 3.3e-06 58.2 271 23.2
PRCOL_00000676 Prasinoderma coloniale HOM05D008447 ORTHO05D010638 4.4e-06 57.8 315 24.4
PGSC0003DMG400025302 Solanum tuberosum HOM05D007982 ORTHO05D010255 5.7e-06 57.4 356 25.0
MD12G1063100 Malus domestica HOM05D008447 ORTHO05D010638 7.5e-06 57.0 288 25.3
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 7.5e-06 57.0 258 24.0
Cfa016881 Carpinus fangiana HOM05D008447 ORTHO05D010638 9.7e-06 56.6 306 22.9


User provided reference genes

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