Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 3.0e-92 342.0 199 100.0
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 7.7e-64 247.7 195 76.4
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 2.6e-56 222.6 202 65.8
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.5e-55 218.0 199 66.3
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.0e-51 206.5 202 62.9
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 3.3e-51 205.7 201 61.7
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 1.7e-47 193.4 199 58.8
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.7e-47 193.4 185 61.6
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 3.8e-47 192.2 177 61.6
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 5.0e-47 191.8 175 62.9
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.1e-46 190.7 177 61.0
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 4.2e-46 188.7 199 57.8
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 4.2e-46 188.7 205 59.5
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 4.2e-46 188.7 205 59.5
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.6e-45 186.8 186 61.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 6.1e-45 184.9 205 59.0
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 6.1e-45 184.9 192 58.3
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.0e-44 184.1 184 61.4
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 6.7e-44 181.4 194 58.8
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 6.7e-44 181.4 199 59.3
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.2e-43 180.6 175 57.1
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.0e-43 179.9 176 56.2
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 3.3e-43 179.1 199 60.8
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 4.4e-43 178.7 186 57.5
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 5.7e-43 178.3 176 55.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 9.7e-43 177.6 170 65.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 1.7e-42 176.8 176 60.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 4.8e-42 175.3 169 58.0
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 8.2e-42 174.5 184 58.2
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 8.2e-42 174.5 199 53.8
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 5.3e-41 171.8 163 65.0
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 7.0e-41 171.4 184 54.3
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 7.0e-41 171.4 170 58.2
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 9.1e-41 171.0 182 54.9
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.2e-40 170.6 192 55.2
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.6e-40 170.2 184 55.4
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.6e-40 170.2 184 55.4
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.0e-40 169.9 178 57.9
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 4.5e-40 168.7 257 49.0
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 5.9e-40 168.3 185 59.5
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 7.7e-40 167.9 180 55.0
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 7.7e-40 167.9 169 56.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.3e-39 167.2 183 55.2
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-39 167.2 183 55.2
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.3e-39 167.2 157 59.9
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 1.7e-39 166.8 180 55.6
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 3.8e-39 165.6 172 55.2
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.8e-39 165.6 176 60.8
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 3.8e-39 165.6 176 57.4
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 5.0e-39 165.2 182 53.3
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.5e-39 164.9 176 61.4
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 6.5e-39 164.9 195 53.8
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 8.5e-39 164.5 172 57.0
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.5e-39 164.5 176 59.7
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 1.5e-38 163.7 207 52.2
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 1.5e-38 163.7 201 57.2
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.9e-38 163.3 176 60.8
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 4.2e-38 162.2 186 57.5
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 4.2e-38 162.2 172 57.0
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 5.5e-38 161.8 199 51.3
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 7.2e-38 161.4 195 51.8
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 4.7e-37 158.7 160 56.9
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 6.1e-37 158.3 199 49.7
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.3e-36 156.4 176 55.7
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.3e-36 156.4 176 55.7
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 2.3e-36 156.4 186 54.3
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 4.0e-36 155.6 193 56.5
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 4.0e-36 155.6 246 47.6
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 5.2e-36 155.2 184 51.6
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 6.8e-36 154.8 178 54.5
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 8.8e-36 154.5 176 54.5
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.5e-35 153.7 168 53.6
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 4.4e-35 152.1 184 52.7
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 9.8e-35 151.0 203 52.7
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 9.8e-35 151.0 175 50.3
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.3e-34 150.6 176 52.8
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-34 150.2 196 51.5
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 2.2e-34 149.8 208 48.6
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 4.8e-34 148.7 213 47.9
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 6.3e-34 148.3 183 51.9
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 8.3e-34 147.9 184 52.2
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.4e-33 147.1 201 46.8
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.2e-32 144.1 200 48.5
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.2e-32 144.1 185 50.3
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.6e-32 143.7 163 52.1
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 5.9e-32 141.7 109 74.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.7e-31 140.2 186 51.1
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.9e-31 139.4 205 49.8
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 6.5e-31 138.3 184 49.5
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 8.5e-31 137.9 202 53.0
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 9.5e-30 134.4 203 49.8
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.2e-29 134.0 194 45.4
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.6e-29 133.7 198 46.0
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 6.1e-29 131.7 190 48.4
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 5.2e-28 128.6 184 45.1
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 6.8e-28 128.3 199 44.2
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.5e-27 127.1 184 46.2
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.6e-27 126.3 184 50.5
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 3.7e-26 122.5 196 45.9
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.4e-25 120.6 172 47.1
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 4.1e-25 119.0 186 43.0
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 4.1e-25 119.0 205 45.9
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.1e-25 119.0 156 46.8
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 2.0e-24 116.7 187 42.8
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-23 113.6 177 46.9
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.1e-22 110.9 197 42.1
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 3.3e-22 109.4 190 42.1
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.3e-22 109.4 199 42.7
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 3.3e-22 109.4 170 45.3
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 4.3e-22 109.0 154 46.8
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.3e-22 109.0 154 46.8
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 4.3e-22 109.0 176 47.2
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 4.3e-22 109.0 146 54.8
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 4.3e-22 109.0 184 46.7
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 1.6e-21 107.1 190 41.6
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 6.1e-21 105.1 185 44.9
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 3.0e-20 102.8 190 44.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 4.0e-20 102.4 123 52.8
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.2e-20 102.1 164 42.7
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.5e-19 100.5 127 52.0
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 2.0e-19 100.1 184 42.4
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 4.9e-18 95.5 105 55.2
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 5.4e-17 92.0 134 50.0
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 7.0e-17 91.7 184 42.4
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 9.2e-17 91.3 179 41.3
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 9.2e-17 91.3 179 41.3
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 3.0e-15 86.3 150 34.0
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 5.0e-15 85.5 105 54.3
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 2.1e-13 80.1 193 37.8
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.4e-12 77.4 57 73.7
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.8e-12 77.0 89 55.1
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.3e-12 76.6 69 59.4
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 8.9e-12 74.7 170 40.0
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 8.9e-12 74.7 105 49.5
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 7.5e-11 71.6 127 44.1
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 2.9e-10 69.7 120 44.2
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 8.3e-10 68.2 164 40.2
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.3e-10 68.2 164 40.2
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-08 64.3 123 43.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 2.7e-08 63.2 105 46.7
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 4.6e-08 62.4 68 44.1
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 6.0e-08 62.0 104 45.2
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 6.6e-07 58.5 66 66.7
C09p05140 Brassica napus HOM05D005061 ORTHO05D006001 8.6e-07 58.2 48 70.8
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 8.6e-07 58.2 48 62.5


User provided reference genes

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