Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36827 Davidia involucrata HOM05D000031 ORTHO05D009851 4.2e-68 261.2 126 100.0
Dinv06262 Davidia involucrata HOM05D000181 ORTHO05D003134 6.6e-21 104.4 56 92.9
CSS0009700 Camellia sinensis var. sinensis HOM05D002902 ORTHO05D009851 3.4e-17 92.0 46 87.0
CSS0033355 Camellia sinensis var. sinensis HOM05D002902 ORTHO05D009851 3.4e-17 92.0 46 87.0
Dinv30852 Davidia involucrata HOM05D000031 ORTHO05D009851 2.2e-16 89.4 49 81.6
Actinidia35539 Actinidia chinensis HOM05D002902 ORTHO05D008934 4.9e-16 88.2 46 78.3
Hma1.2p1_1320F.1_g275305 Hydrangea macrophylla HOM05D000031 ORTHO05D009851 3.2e-15 85.5 48 77.1
vmacro01535 Vaccinium macrocarpon HOM05D000031 ORTHO05D009851 5.4e-15 84.7 46 80.4
DCAR_003379 Daucus carota HOM05D000031 ORTHO05D009851 9.3e-15 84.0 46 73.9
TAR362G1159 Trochodendron aralioides HOM05D000031 ORTHO05D009851 1.2e-14 83.6 48 72.9
Aqoxy2G02857 Aquilegia oxysepala HOM05D000031 ORTHO05D009851 1.7e-13 79.7 45 71.1
TAR633G1280 Trochodendron aralioides HOM05D000031 ORTHO05D009851 1.7e-13 79.7 45 75.6
Atru.chr2.121 Acer truncatum HOM05D000031 ORTHO05D009851 2.3e-13 79.3 46 69.6
CsaV3_2G006830 Cucumis sativus L. HOM05D000031 ORTHO05D009851 2.3e-13 79.3 46 69.6
Ciclev10003862m.g Citrus clementina HOM05D000031 ORTHO05D009851 3.0e-13 79.0 46 73.9
Potri.013G011700 Populus trichocarpa HOM05D000031 ORTHO05D009851 3.0e-13 79.0 45 75.6
TWI12G1464 Tripterygium wilfordii HOM05D000031 ORTHO05D009851 3.0e-13 79.0 47 74.5
Nitab4.5_0002612g0030 Nicotiana tabacum HOM05D002902 ORTHO05D008934 3.9e-13 78.6 48 70.8
ClCG02G015180 Citrullus lanatus HOM05D000031 ORTHO05D009851 8.7e-13 77.4 46 69.6
MELO3C004207.2 Cucumis melo HOM05D000031 ORTHO05D009851 8.7e-13 77.4 46 69.6
Cfa006673 Carpinus fangiana HOM05D000031 ORTHO05D009851 1.1e-12 77.0 47 70.2
Hma1.2p1_0757F.1_g213270 Hydrangea macrophylla HOM05D000181 ORTHO05D003134 1.1e-12 77.0 52 75.0
Atru.chr2.350 Acer truncatum HOM05D000031 ORTHO05D009851 1.5e-12 76.6 46 69.6
Eucgr.H03274 Eucalyptus grandis HOM05D000031 ORTHO05D009851 1.5e-12 76.6 46 69.6
CAN.G1273.23 Capsicum annuum HOM05D000031 ORTHO05D009851 2.5e-12 75.9 47 68.1
CiPaw.08G158400 Carya illinoinensis HOM05D000031 ORTHO05D009851 2.5e-12 75.9 46 71.7
Sabra05G0027300 Salix brachista HOM05D000031 ORTHO05D009851 2.5e-12 75.9 45 73.3
Sed0020677 Sechium edule HOM05D000031 ORTHO05D009851 2.5e-12 75.9 46 65.2
CAN.G1273.24 Capsicum annuum HOM05D000031 ORTHO05D009851 3.3e-12 75.5 47 68.1
Manes.08G114300 Manihot esculenta HOM05D000031 ORTHO05D009851 3.3e-12 75.5 41 73.2
Lalb_Chr18g0045931 Lupinus albus HOM05D000031 ORTHO05D009851 4.3e-12 75.1 47 63.8
QL03p017086 Quercus lobata HOM05D000031 ORTHO05D009851 4.3e-12 75.1 47 66.0
QL03p017371 Quercus lobata HOM05D000031 ORTHO05D009851 4.3e-12 75.1 47 66.0
Potri.005G021300 Populus trichocarpa HOM05D000031 ORTHO05D009851 5.6e-12 74.7 45 71.1
Manes.08G114100 Manihot esculenta HOM05D000031 ORTHO05D009851 7.4e-12 74.3 45 66.7
Thecc.05G318900 Theobroma cacao HOM05D000031 ORTHO05D009851 7.4e-12 74.3 46 71.7
Sabra13G0010300 Salix brachista HOM05D002902 ORTHO05D009851 9.6e-12 73.9 45 68.9
TWI56G0475 Tripterygium wilfordii HOM05D000031 ORTHO05D009851 1.3e-11 73.6 47 66.0
Duzib177G0809 Durio zibethinus HOM05D000031 ORTHO05D009851 2.1e-11 72.8 39 79.5
TPR.G1643 Trifolium pratense HOM05D000031 ORTHO05D009851 2.1e-11 72.8 48 60.4
Medtr7g112440 Medicago truncatula HOM05D000031 ORTHO05D009851 2.8e-11 72.4 46 63.0
Cpa.g.sc48.129 Carica papaya HOM05D000031 ORTHO05D009851 3.6e-11 72.0 45 64.4
Solyc01g100090.1 Solanum lycopersicum HOM05D000031 ORTHO05D009851 3.6e-11 72.0 47 66.0
CiPaw.07G025700 Carya illinoinensis HOM05D000031 ORTHO05D009851 4.8e-11 71.6 40 77.5
PSO170G1225 Papaver somniferum HOM05D000031 ORTHO05D009851 8.1e-11 70.9 40 72.5
PSO302G0001 Papaver somniferum HOM05D000031 ORTHO05D009851 8.1e-11 70.9 40 72.5
COL.COLO4_03803 Corchorus olitorius HOM05D000031 ORTHO05D009851 1.1e-10 70.5 38 78.9
Ca_09328_v3 Cicer arietinum L. HOM05D000031 ORTHO05D009851 1.4e-10 70.1 46 58.7
Manes.08G114200 Manihot esculenta HOM05D000031 ORTHO05D009851 2.4e-10 69.3 45 64.4
Gohir.A11G270800 Gossypium hirsutum HOM05D000031 ORTHO05D009851 3.1e-10 68.9 43 67.4
Gohir.D11G281000 Gossypium hirsutum HOM05D000031 ORTHO05D009851 3.1e-10 68.9 43 67.4
Gorai.007G303400 Gossypium raimondii HOM05D000031 ORTHO05D009851 3.1e-10 68.9 43 67.4
Nitab4.5_0000005g0580 Nicotiana tabacum HOM05D000031 ORTHO05D009851 3.1e-10 68.9 38 76.3
PGR031G1672 Punica granatum HOM05D000031 ORTHO05D009851 3.1e-10 68.9 45 60.0
Nitab4.5_0006029g0010 Nicotiana tabacum HOM05D000031 ORTHO05D009851 4.0e-10 68.6 37 78.4
QL03p017874 Quercus lobata HOM05D000031 ORTHO05D009851 4.0e-10 68.6 46 60.9
Duzib106G1394 Durio zibethinus HOM05D000031 ORTHO05D009851 5.3e-10 68.2 39 71.8
Glyma.19G230300 Glycine max HOM05D000031 ORTHO05D009851 5.3e-10 68.2 46 58.7
QL03p017863 Quercus lobata HOM05D000031 ORTHO05D009851 5.3e-10 68.2 46 60.9
arahy.Tifrunner.gnm1.ann1.9NC2ZT Arachis hypogaea HOM05D000031 ORTHO05D009851 6.9e-10 67.8 44 61.4
CSS0008560 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 6.9e-10 67.8 52 61.5
Lj1g0001352 Lotus japonicus HOM05D000031 ORTHO05D009851 6.9e-10 67.8 46 58.7
CANSAT54G3051 Cannabis sativa HOM05D000031 ORTHO05D009851 9.0e-10 67.4 45 64.4
Psat3g013680 Pisum sativum HOM05D000031 ORTHO05D009851 1.2e-09 67.0 46 56.5
Prupe.6G316900 Prunus persica HOM05D000031 ORTHO05D009851 1.2e-09 67.0 43 67.4
MD04G1196600 Malus domestica HOM05D000031 ORTHO05D009851 3.4e-09 65.5 50 56.0
Hma1.2p1_0615F.1_g189800 Hydrangea macrophylla HOM05D000181 ORTHO05D003134 4.5e-09 65.1 50 66.0
VMungo1383G3708 Vigna mungo HOM05D000031 ORTHO05D009851 4.5e-09 65.1 43 62.8
ATR0796G171 Amborella trichopoda HOM05D000031 ORTHO05D009851 5.8e-09 64.7 38 76.3
Phvul.001G226900 Phaseolus vulgaris HOM05D000031 ORTHO05D009851 5.8e-09 64.7 43 60.5
RcHm_v2.0_Chr3g0456581 Rosa chinensis HOM05D000031 ORTHO05D009851 5.8e-09 64.7 41 68.3
FvH4_6g07040 Fragaria vesca HOM05D000031 ORTHO05D009851 7.6e-09 64.3 41 68.3
FAN02G0405 Fragaria x ananassa HOM05D000031 ORTHO05D009851 7.6e-09 64.3 41 68.3
FAN05G0693 Fragaria x ananassa HOM05D000031 ORTHO05D009851 7.6e-09 64.3 41 68.3
FAN09G1034 Fragaria x ananassa HOM05D000031 ORTHO05D009851 7.6e-09 64.3 41 68.3
FAN14G4720 Fragaria x ananassa HOM05D000031 ORTHO05D009851 7.6e-09 64.3 41 68.3
RcHm_v2.0_Chr3g0456571 Rosa chinensis HOM05D000031 ORTHO05D009851 1.7e-08 63.2 41 65.9
GSVIVG01024927001 Vitis vinifera HOM05D000181 ORTHO05D003134 4.9e-08 61.6 54 64.8
EL10Ac7g16046 Beta vulgaris HOM05D000181 ORTHO05D003134 1.4e-07 60.1 52 57.7
CSS0020099 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 1.4e-07 60.1 52 55.8
CSS0033381 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D003134 1.4e-07 60.1 52 55.8
CiPaw.13G091400 Carya illinoinensis HOM05D000181 ORTHO05D003134 1.4e-07 60.1 50 60.0
AUR62001758 Chenopodium quinoa HOM05D000181 ORTHO05D003134 1.9e-07 59.7 52 53.8
AUR62009544 Chenopodium quinoa HOM05D000181 ORTHO05D003134 3.2e-07 58.9 52 53.8
Ah.15g097760 Amaranthus hybridus HOM05D000181 ORTHO05D003134 5.5e-07 58.2 59 50.8
HanXRQChr09g0247991 Helianthus annuus HOM05D000031 ORTHO05D009851 7.1e-07 57.8 36 63.9
Lj2A1066T67 Lonicera japonica HOM05D000181 ORTHO05D003134 2.1e-06 56.2 52 57.7
vmacro03045 Vaccinium macrocarpon HOM05D000181 ORTHO05D003134 2.1e-06 56.2 56 51.8
QL01p030988 Quercus lobata HOM05D000181 ORTHO05D003134 2.7e-06 55.8 53 56.6


User provided reference genes

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