Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.6e-39 165.6 82 100.0
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 9.9e-26 119.8 71 81.7
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-25 117.5 71 78.9
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 8.4e-25 116.7 73 72.6
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.1e-24 116.3 74 73.0
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.1e-24 116.3 71 83.1
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.9e-24 115.5 71 77.5
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 7.1e-24 113.6 68 82.4
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.6e-23 112.5 76 71.1
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.6e-23 110.9 72 75.0
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 4.6e-23 110.9 80 66.2
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 4.6e-23 110.9 69 78.3
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 6.0e-23 110.5 68 75.0
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 1.0e-22 109.8 68 75.0
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 1.0e-22 109.8 68 75.0
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 1.0e-22 109.8 71 69.0
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 3.9e-22 107.8 68 73.5
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 6.7e-22 107.1 72 69.4
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 6.7e-22 107.1 72 69.4
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 2.5e-21 105.1 72 72.2
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 3.3e-21 104.8 72 73.6
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 4.3e-21 104.4 72 69.4
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 5.6e-21 104.0 72 70.8
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 9.6e-21 103.2 82 64.6
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 9.6e-21 103.2 72 75.0
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 2.1e-20 102.1 72 68.1
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 3.7e-20 101.3 75 69.3
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.8e-20 100.9 77 66.2
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.1e-20 100.1 70 71.4
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 8.1e-20 100.1 70 71.4
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 8.1e-20 100.1 72 65.3
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.1e-19 99.8 72 69.4
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 1.1e-19 99.8 66 71.2
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 1.8e-19 99.0 71 70.4
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.8e-19 99.0 72 69.4
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.4e-19 98.6 72 69.4
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.4e-19 98.6 74 68.9
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 3.1e-19 98.2 70 70.0
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 4.0e-19 97.8 77 62.3
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 4.0e-19 97.8 71 70.4
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 5.3e-19 97.4 71 67.6
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 5.3e-19 97.4 67 71.6
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 6.9e-19 97.1 71 67.6
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 6.9e-19 97.1 71 63.4
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 6.9e-19 97.1 77 63.6
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 2.0e-18 95.5 72 68.1
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 3.4e-18 94.7 69 68.1
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.4e-18 94.7 63 73.0
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 4.5e-18 94.4 67 71.6
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 4.5e-18 94.4 73 67.1
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 7.6e-18 93.6 55 83.6
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.3e-17 92.8 62 71.0
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 2.2e-17 92.0 71 62.0
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 2.9e-17 91.7 74 59.5
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 2.9e-17 91.7 72 63.9
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 3.8e-17 91.3 69 68.1
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 3.8e-17 91.3 70 64.3
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 4.9e-17 90.9 72 65.3
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 4.9e-17 90.9 76 60.5
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 6.5e-17 90.5 81 59.3
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 8.4e-17 90.1 71 64.8
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.1e-16 89.7 69 66.7
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 1.9e-16 89.0 74 59.5
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 1.9e-16 89.0 73 64.4
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 2.5e-16 88.6 74 56.8
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 2.5e-16 88.6 70 64.3
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 3.2e-16 88.2 70 64.3
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 4.2e-16 87.8 72 61.1
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 5.5e-16 87.4 72 62.5
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 7.1e-16 87.0 67 65.7
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.2e-15 86.3 59 71.2
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.6e-15 85.9 72 62.5
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 1.6e-15 85.9 68 58.8
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.6e-15 85.9 72 62.5
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 2.1e-15 85.5 72 62.5
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 2.7e-15 85.1 68 64.7
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 3.5e-15 84.7 51 74.5
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 4.6e-15 84.3 72 61.1
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 6.0e-15 84.0 72 62.5
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 6.0e-15 84.0 72 61.1
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 7.9e-15 83.6 72 61.1
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 7.9e-15 83.6 68 63.2
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 7.9e-15 83.6 68 63.2
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 7.9e-15 83.6 68 63.2
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 7.9e-15 83.6 55 72.7
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.0e-14 83.2 70 61.4
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 3.0e-14 81.6 67 65.7
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 5.1e-14 80.9 72 59.7
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 6.7e-14 80.5 79 58.2
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 8.7e-14 80.1 75 56.0
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.1e-13 79.7 67 61.2
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 1.5e-13 79.3 65 58.5
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 7.4e-13 77.0 72 56.9
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 9.6e-13 76.6 58 63.8
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 4.8e-12 74.3 68 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.1e-11 73.2 57 64.9
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 1.1e-11 73.2 65 58.5
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 4.5e-10 67.8 43 76.7
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 1.0e-09 66.6 84 46.4
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 2.2e-09 65.5 70 48.6
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.5e-08 62.0 33 84.8
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 4.6e-07 57.8 42 69.0
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 6.7e-06 53.9 45 57.8


User provided reference genes

Program Settings