Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 4.5e-98 361.3 189 100.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 4.2e-80 301.6 188 81.9
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.5e-56 223.4 190 65.3
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 4.7e-55 218.4 195 63.6
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 9.2e-51 204.1 198 59.1
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 2.7e-50 202.6 191 58.6
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.0e-49 200.7 188 59.6
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.3e-49 199.5 203 57.6
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 2.3e-49 199.5 192 64.1
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.1e-46 190.7 198 54.5
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.5e-45 186.8 192 57.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.3e-44 183.7 190 59.5
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.7e-44 183.3 191 57.1
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 2.2e-44 183.0 190 57.4
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 3.8e-44 182.2 191 55.5
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 1.4e-43 180.3 191 54.5
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 2.4e-43 179.5 192 55.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 7.1e-43 177.9 142 62.7
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.7e-42 176.0 195 56.9
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 6.0e-42 174.9 191 55.5
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 6.0e-42 174.9 190 55.8
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 6.0e-42 174.9 193 56.0
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 7.8e-42 174.5 200 53.0
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.3e-41 172.9 191 55.0
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.1e-41 171.8 190 58.9
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.6e-41 171.4 187 52.9
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 8.7e-41 171.0 144 62.5
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 8.7e-41 171.0 190 51.6
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 8.7e-41 171.0 190 51.6
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.5e-40 169.5 190 51.1
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.3e-40 167.9 187 51.3
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.2e-39 167.2 198 50.5
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.6e-39 166.8 191 51.3
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 6.2e-39 164.9 192 50.5
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 8.1e-39 164.5 193 51.8
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 8.1e-39 164.5 193 51.3
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 8.1e-39 164.5 193 51.3
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.0e-38 162.2 189 52.4
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-37 159.1 193 49.7
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-37 159.1 193 49.7
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 5.8e-37 158.3 190 53.2
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-37 158.3 189 50.3
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 5.8e-37 158.3 189 50.3
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 7.6e-37 157.9 130 63.8
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-36 157.1 199 49.7
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-36 156.8 193 49.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.2e-36 156.4 199 48.7
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.9e-35 153.3 197 50.8
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.9e-35 153.3 194 52.1
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.4e-35 152.9 194 52.1
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 9.3e-35 151.0 189 49.7
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 9.3e-35 151.0 191 48.2
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.2e-34 150.6 194 51.5
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.2e-34 150.6 189 49.7
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.2e-34 150.6 197 50.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.7e-34 149.4 195 50.8
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.1e-32 144.1 152 55.3
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.5e-32 143.7 207 47.3
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-32 142.9 189 48.7
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.5e-32 142.9 189 46.0
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 7.3e-32 141.4 189 48.7
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 6.2e-31 138.3 153 56.2
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.1e-30 137.5 158 50.0
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 2.4e-30 136.3 207 48.8
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 3.1e-30 136.0 227 45.4
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.1e-30 136.0 198 42.9
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 4.0e-30 135.6 196 49.0
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.0e-29 133.3 203 45.8
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.3e-28 130.6 195 47.7
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 3.8e-28 129.0 80 81.2
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 3.8e-28 129.0 205 45.9
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 8.4e-28 127.9 202 45.5
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 8.4e-28 127.9 216 44.4
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.1e-27 127.5 192 42.2
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 1.4e-27 127.1 191 43.5
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.4e-27 127.1 196 42.9
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.4e-27 127.1 195 45.1
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.4e-27 127.1 201 43.8
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.4e-27 127.1 74 86.5
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.9e-27 126.7 193 44.6
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 3.2e-27 125.9 191 49.2
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 2.1e-26 123.2 190 44.2
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 2.1e-26 123.2 237 37.6
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 3.5e-26 122.5 141 54.6
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.5e-26 122.5 201 44.3
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 6.0e-26 121.7 195 47.7
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 7.9e-26 121.3 193 45.1
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 3.9e-25 119.0 198 45.5
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 3.9e-25 119.0 192 43.2
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 5.1e-25 118.6 195 41.0
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 2.5e-24 116.3 190 45.8
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.3e-24 115.5 190 41.1
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 5.6e-24 115.2 137 52.6
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 9.6e-24 114.4 198 46.5
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.3e-23 114.0 189 43.4
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.8e-23 112.8 131 56.5
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 3.7e-23 112.5 210 42.9
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 3.7e-23 112.5 210 42.9
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 6.2e-23 111.7 210 40.5
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 6.2e-23 111.7 209 43.5
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 6.2e-23 111.7 147 51.0
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 1.8e-22 110.2 207 43.0
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.8e-22 110.2 207 43.0
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.4e-22 109.8 189 41.8
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 4.0e-22 109.0 189 42.3
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 4.0e-22 109.0 189 44.4
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 6.9e-22 108.2 194 39.2
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 9.0e-22 107.8 196 40.3
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.5e-21 107.1 205 41.0
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.5e-21 107.1 193 42.0
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 2.0e-21 106.7 129 50.4
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.0e-21 106.7 189 42.3
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 2.6e-21 106.3 196 41.8
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 3.4e-21 105.9 77 74.0
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 7.6e-21 104.8 189 40.2
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 9.9e-21 104.4 189 38.6
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.7e-20 103.6 97 61.9
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.9e-20 102.8 197 41.6
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 3.8e-20 102.4 188 38.8
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 6.4e-20 101.7 167 43.7
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 6.4e-20 101.7 155 43.2
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 8.4e-20 101.3 198 38.9
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 8.4e-20 101.3 198 38.9
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 8.4e-20 101.3 197 37.1
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.1e-19 100.9 89 62.9
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.4e-19 100.5 198 38.9
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.4e-19 100.5 199 43.2
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.9e-19 100.1 124 44.4
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 9.3e-19 97.8 195 38.5
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.2e-18 97.4 202 37.6
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.2e-18 97.4 199 40.7
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.6e-18 97.1 195 42.6
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.1e-18 96.7 90 65.6
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.7e-18 96.3 201 41.3
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.7e-18 96.3 202 38.1
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 3.5e-18 95.9 77 67.5
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 4.6e-18 95.5 186 40.3
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 4.6e-18 95.5 84 65.5
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 3.0e-17 92.8 195 40.5
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.0e-17 92.8 207 35.3
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.8e-15 86.3 198 35.9
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.4e-14 84.0 202 35.1
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.8e-14 83.6 157 48.4
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.5e-13 79.0 131 42.0
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 3.2e-11 72.8 196 34.7
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 4.2e-11 72.4 147 37.4
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 5.5e-11 72.0 99 43.4
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.3e-09 67.4 212 32.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 8.7e-09 64.7 104 43.3
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.1e-08 64.3 89 52.8
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.5e-08 63.2 106 46.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 3.3e-08 62.8 92 51.1
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 9.7e-08 61.2 162 31.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.8e-07 59.7 87 50.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.8e-07 58.9 82 51.2
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.4e-06 57.4 89 46.1
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 4.1e-06 55.8 93 38.7
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.1e-06 55.8 83 47.0
HPP92_025086 Vanilla planifolia HOM05D004499 ORTHO05D004928 4.1e-06 55.8 138 34.8
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 5.3e-06 55.5 95 40.0
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 5.3e-06 55.5 89 42.7
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 5.3e-06 55.5 87 50.6
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 5.3e-06 55.5 87 50.6
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 5.3e-06 55.5 87 49.4
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 5.3e-06 55.5 87 50.6
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 9.0e-06 54.7 92 46.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 9.0e-06 54.7 100 45.0
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 9.0e-06 54.7 87 48.3


User provided reference genes

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