Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.1e-136 489.2 281 100.0
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 6.9e-103 377.9 281 76.2
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.2e-78 297.4 281 63.7
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 6.6e-61 238.4 292 58.9
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.4e-57 226.1 288 51.4
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.2e-55 219.5 288 50.3
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.2e-48 196.8 268 54.9
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.7e-45 187.2 286 45.8
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.5e-44 184.1 297 43.1
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 5.6e-44 182.2 279 46.2
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 1.2e-43 181.0 285 48.8
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 5.2e-42 175.6 297 43.8
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 3.7e-40 169.5 285 48.8
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.7e-37 160.6 278 44.2
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.1e-36 157.9 262 44.7
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.1e-36 157.9 319 40.4
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.5e-36 157.5 282 42.9
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.3e-36 156.0 293 44.0
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 7.3e-36 155.2 295 42.0
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 9.5e-36 154.8 272 44.1
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 3.6e-35 152.9 269 47.2
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 6.2e-35 152.1 305 37.7
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.1e-34 151.4 295 38.0
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 2.4e-34 150.2 332 40.4
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 2.4e-34 150.2 265 42.6
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 6.8e-34 148.7 300 40.7
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.8e-34 148.7 293 44.0
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.9e-34 148.3 294 43.5
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.5e-33 147.5 293 43.7
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.7e-32 144.1 266 42.1
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 2.2e-32 143.7 317 39.7
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.4e-31 141.0 289 39.1
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 1.4e-31 141.0 286 40.2
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 3.2e-31 139.8 296 40.2
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 5.4e-31 139.0 258 43.0
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 1.2e-30 137.9 266 40.6
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.1e-30 137.1 276 41.7
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 5.1e-29 132.5 223 44.8
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 8.7e-29 131.7 333 35.7
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.7e-29 131.7 267 40.1
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 1.9e-28 130.6 287 38.0
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.3e-28 129.8 281 38.8
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 7.3e-28 128.6 286 38.8
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.2e-27 127.9 257 40.5
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.1e-27 127.1 274 38.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 3.6e-27 126.3 266 36.8
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.6e-27 126.3 265 41.5
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 8.1e-27 125.2 268 39.2
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.2e-25 121.3 268 38.4
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 2.0e-25 120.6 272 38.2
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 3.4e-25 119.8 267 39.0
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 7.6e-25 118.6 233 41.2
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 9.9e-25 118.2 285 37.9
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.7e-24 117.5 273 44.0
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.7e-24 117.5 227 40.1
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 2.2e-24 117.1 187 45.5
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 2.9e-24 116.7 262 39.3
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 4.9e-24 115.9 283 35.3
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 6.4e-24 115.5 272 37.1
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 8.4e-24 115.2 292 38.0
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 1.1e-23 114.8 298 37.2
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.4e-23 114.4 229 44.1
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.9e-23 114.0 233 40.3
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.9e-23 114.0 203 48.8
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 4.2e-23 112.8 277 35.7
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 7.1e-23 112.1 279 34.8
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 2.1e-22 110.5 293 34.8
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 4.6e-22 109.4 289 40.8
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 6.6e-21 105.5 170 41.8
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 8.7e-21 105.1 275 33.5
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 2.5e-20 103.6 265 40.0
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 3.3e-20 103.2 261 39.5
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 6.2e-19 99.0 283 41.3
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 1.4e-18 97.8 99 60.6
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 1.4e-18 97.8 296 34.1
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.5e-17 94.4 271 34.7
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 2.0e-17 94.0 244 34.8
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 3.4e-17 93.2 188 44.1
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 9.9e-17 91.7 279 31.2
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 9.9e-17 91.7 281 35.9
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.3e-16 91.3 323 31.0
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.2e-16 90.5 279 35.5
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 6.4e-16 89.0 89 58.4
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 6.4e-16 89.0 274 33.2
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.9e-15 87.4 181 34.8
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.2e-15 86.3 86 57.0
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 7.1e-15 85.5 166 41.0
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.6e-14 84.3 270 37.8
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 2.1e-14 84.0 99 52.5
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 4.6e-14 82.8 77 61.0
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 4.6e-14 82.8 271 32.1
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 6.0e-14 82.4 277 30.7
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 7.9e-14 82.0 70 62.9
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 7.9e-14 82.0 71 66.2
CAN.G608.34 Capsicum annuum HOM05D004973 ORTHO05D006119 1.0e-13 81.6 237 38.4
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 1.0e-13 81.6 262 32.8
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.3e-13 81.3 87 51.7
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 3.0e-13 80.1 80 57.5
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 3.0e-13 80.1 96 52.1
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 8.7e-13 78.6 99 48.5
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.5e-12 77.0 258 33.7
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 2.5e-12 77.0 90 54.4
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 4.3e-12 76.3 227 33.0
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 5.6e-12 75.9 90 56.7
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 7.4e-12 75.5 264 31.1
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 7.4e-12 75.5 95 53.7
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 7.4e-12 75.5 107 47.7
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 9.6e-12 75.1 53 71.7
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 1.3e-11 74.7 90 52.2
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 1.3e-11 74.7 97 50.5
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.8e-11 73.6 97 51.5
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.8e-11 73.6 97 51.5
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 3.7e-11 73.2 101 50.5
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 8.1e-11 72.0 92 52.2
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 1.1e-10 71.6 272 29.4
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.4e-10 71.2 82 51.2
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 1.4e-10 71.2 89 49.4
PGSC0003DMG400018718 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.8e-10 70.9 74 54.1
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.8e-10 70.9 80 51.2
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 3.1e-10 70.1 91 46.2
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 3.1e-10 70.1 91 46.2
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 5.3e-10 69.3 70 57.1
PGSC0003DMG400002023 Solanum tuberosum HOM05D004973 ORTHO05D006119 5.3e-10 69.3 83 49.4
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 6.9e-10 68.9 260 30.8
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 1.2e-09 68.2 70 57.1
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 1.2e-09 68.2 230 30.9
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.5e-09 67.8 70 57.1
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 2.0e-09 67.4 90 47.8
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 2.6e-09 67.0 73 57.5
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-08 64.7 65 50.8
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 3.8e-08 63.2 65 49.2
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 3.8e-08 63.2 242 32.6
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.9e-07 60.8 212 36.3
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 5.5e-07 59.3 281 29.5
TAR623G0031 Trochodendron aralioides HOM05D004973 ORTHO05D050228 7.1e-07 58.9 66 56.1
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 9.3e-07 58.5 282 29.8
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 2.7e-06 57.0 325 26.8
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 7.9e-06 55.5 256 27.0
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 7.9e-06 55.5 251 27.1


User provided reference genes

Program Settings