Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 0.0e+00 2183.7 1080 100.0
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 7.4e-312 1073.5 966 59.9
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 1.8e-308 1062.8 946 58.2
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 1.3e-298 1030.0 995 56.0
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 2.5e-286 989.2 969 56.1
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 9.9e-283 977.2 975 54.2
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 2.2e-282 976.1 1042 53.0
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 5.4e-281 971.5 943 55.5
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 1.1e-273 947.2 973 54.3
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 4.2e-273 945.3 965 53.4
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 2.3e-271 939.5 964 53.7
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 6.3e-269 931.4 965 53.0
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 3.5e-264 915.6 974 51.4
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 8.7e-263 911.0 974 51.1
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.5e-259 900.2 968 51.1
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 5.0e-258 895.2 953 52.7
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 6.5e-258 894.8 968 50.6
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 1.4e-257 893.6 947 51.7
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 2.7e-256 889.4 951 51.0
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 3.0e-255 885.9 956 50.7
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 5.7e-254 881.7 947 50.6
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 4.1e-252 875.5 966 51.3
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.3e-250 870.5 973 50.2
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 6.5e-250 868.2 986 49.7
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 4.2e-249 865.5 973 49.9
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 6.1e-248 861.7 973 50.1
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 8.5e-242 841.3 861 53.2
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 2.5e-241 839.7 959 50.4
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 1.8e-239 833.6 963 49.7
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 9.7e-238 827.8 955 49.5
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 8.2e-237 824.7 949 48.9
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 3.5e-235 819.3 958 48.1
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 5.9e-235 818.5 966 48.8
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 2.4e-228 796.6 952 48.3
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 2.7e-224 783.1 959 47.5
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 6.8e-223 778.5 971 46.8
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 8.8e-223 778.1 971 46.0
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 2.6e-222 776.5 980 47.6
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 4.9e-221 772.3 963 46.6
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 3.8e-218 762.7 952 46.8
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 1.6e-216 757.3 967 46.4
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 4.7e-216 755.7 957 46.7
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 7.5e-214 748.4 943 46.0
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 9.8e-214 748.0 972 45.2
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 1.3e-213 747.7 964 45.4
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 4.3e-209 732.6 954 45.5
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 5.2e-207 725.7 956 46.3
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 1.4e-204 717.6 788 52.7
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 9.2e-204 714.9 955 45.8
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 1.7e-202 710.7 948 46.0
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 5.0e-202 709.1 966 44.4
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 2.5e-201 706.8 794 49.0
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 1.6e-200 704.1 941 44.1
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 2.8e-200 703.4 970 43.6
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 5.4e-196 689.1 958 43.2
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 7.1e-196 688.7 959 44.8
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 4.6e-195 686.0 972 43.5
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.7e-187 660.2 946 42.2
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 6.6e-186 655.6 946 42.1
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 1.2e-179 634.8 953 41.7
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 7.8e-179 632.1 968 42.0
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 1.9e-177 627.5 982 41.1
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 2.4e-172 610.5 937 40.4
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 2.7e-171 607.1 958 42.1
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 3.5e-171 606.7 789 45.0
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 3.3e-169 600.1 954 39.4
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 5.6e-169 599.4 952 40.4
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 5.6e-169 599.4 973 40.8
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 6.9e-167 592.4 952 41.1
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 6.9e-167 592.4 974 40.6
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 4.5e-166 589.7 952 41.0
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 2.9e-165 587.0 953 40.5
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 4.9e-165 586.3 978 39.1
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 1.4e-164 584.7 953 40.4
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 1.4e-164 584.7 955 38.6
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 2.1e-163 580.9 965 40.4
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 7.9e-163 578.9 955 38.3
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 6.7e-162 575.9 965 40.2
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 3.1e-159 567.0 947 40.3
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 1.5e-158 564.7 954 40.6
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 1.5e-158 564.7 814 42.6
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 3.4e-158 563.5 947 40.2
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 1.5e-153 548.1 823 42.3
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 1.6e-152 544.7 818 40.1
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 4.8e-152 543.1 823 42.0
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 6.1e-147 526.2 898 38.9
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 6.7e-146 522.7 1018 36.3
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 2.6e-142 510.8 945 37.0
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 1.1e-140 505.4 822 41.1
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 5.7e-137 493.0 828 39.3
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.2e-136 491.1 427 60.4
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 1.4e-135 488.4 544 50.7
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 7.4e-129 466.1 769 38.6
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 2.8e-128 464.2 843 37.5
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 4.8e-128 463.4 941 33.8
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 9.1e-127 459.1 963 34.6
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 2.3e-122 444.5 652 42.9
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 1.5e-121 441.8 924 35.0
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 3.1e-119 434.1 1001 32.0
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 1.6e-115 421.8 759 36.4
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 3.0e-114 417.5 778 36.2
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.2e-113 415.6 914 34.6
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 7.5e-113 412.9 778 36.2
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 1.7e-112 411.8 835 35.3
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 1.7e-112 411.8 985 33.3
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 1.7e-109 401.7 908 33.3
vmacro05815 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.5e-108 398.7 376 57.2
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 2.5e-108 397.9 967 31.9
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 2.5e-108 397.9 650 40.2
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 3.2e-108 397.5 543 44.8
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 3.2e-108 397.5 543 44.8
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 2.1e-107 394.8 432 51.6
SHI25551 Sapria himalayana HOM05D003353 ORTHO05D003751 4.9e-104 383.6 589 43.1
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 1.8e-103 381.7 702 35.2
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 4.5e-102 377.1 773 34.2
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 3.3e-100 370.9 938 32.9
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 3.3e-100 370.9 779 34.0
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 6.6e-93 346.7 439 45.6
FAN05G2549 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.4e-90 339.0 333 55.0
FAN09G2719 Fragaria x ananassa HOM05D003353 ORTHO05D022659 3.7e-88 330.9 328 54.9
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 2.3e-85 321.6 913 28.6
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 8.1e-83 313.2 432 43.3
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 8.1e-83 313.2 790 30.9
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 5.2e-82 310.5 702 30.9
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 8.9e-82 309.7 713 32.1
Sc06g0001600 Simmondsia chinensis HOM05D003353 ORTHO05D003751 2.6e-81 308.1 418 44.0
CSS0032060 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 3.0e-77 294.7 661 33.6
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 9.0e-58 229.9 567 34.2
Lsat_1_v5_gn_4_182161 Lactuca sativa HOM05D003353 ORTHO05D003751 6.0e-54 217.2 411 33.6
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 7.9e-54 216.9 580 29.3
Lsat_1_v5_gn_4_181301 Lactuca sativa HOM05D003353 ORTHO05D003751 4.8e-51 207.6 412 33.0
Lj7C591T5 Lonicera japonica HOM05D003353 ORTHO05D003751 3.4e-33 148.3 159 50.3
Hma1.2p1_0802F.1_g220460 Hydrangea macrophylla HOM05D003353 ORTHO05D003751 6.5e-32 144.1 137 54.7
Carub.0001s0468 Capsella rubella HOM05D003353 ORTHO05D003751 2.3e-29 135.6 225 36.4
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 1.9e-28 132.5 612 24.8
SHI25555 Sapria himalayana HOM05D003353 ORTHO05D003751 1.9e-28 132.5 139 48.2
VMungo0464G0255 Vigna mungo HOM05D003353 ORTHO05D003751 2.5e-28 132.1 154 48.1
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 5.9e-25 120.9 233 35.2
Lalb_Chr14g0362801 Lupinus albus HOM05D003353 ORTHO05D003751 2.1e-22 112.5 232 34.1
Dinv33502 Davidia involucrata HOM05D003353 ORTHO05D003751 2.7e-22 112.1 540 26.7
Carub.0001s0467 Capsella rubella HOM05D003353 ORTHO05D003751 6.1e-22 110.9 192 39.6
Ca_04206_v3 Cicer arietinum L. HOM05D003353 ORTHO05D003751 2.3e-21 109.0 161 41.6
Lalb_Chr14g0362821 Lupinus albus HOM05D003353 ORTHO05D003751 1.5e-20 106.3 256 31.2
Lalb_Chr02g0160031 Lupinus albus HOM05D003353 ORTHO05D003751 1.4e-18 99.8 126 46.8
TPR.G2296 Trifolium pratense HOM05D003353 ORTHO05D003751 1.8e-18 99.4 176 38.6
QL05p070069 Quercus lobata HOM05D003353 ORTHO05D003751 1.1e-15 90.1 159 41.5
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 5.5e-15 87.8 699 21.2
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 1.6e-14 86.3 174 35.1
Nn2g15375 Nelumbo nucifera HOM05D003353 ORTHO05D003751 5.7e-12 77.8 102 43.1
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.7e-11 76.3 222 26.6
AagrBONN_evm.TU.Sc2ySwM_228.838 Anthoceros agrestis HOM05D003353 ORTHO05D003751 3.7e-11 75.1 300 24.7
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 3.7e-11 75.1 124 32.3
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 5.0e-08 64.7 52 55.8
Os02g0192300 Oryza sativa ssp. japonica HOM05D003353 ORTHO05D003751 1.5e-07 63.2 133 29.3
AagrBONN_evm.TU.Sc2ySwM_228.4424 Anthoceros agrestis HOM05D003353 ORTHO05D003751 1.9e-07 62.8 291 25.4
ECA232G4683 Erigeron canadensis HOM05D003353 ORTHO05D003751 4.2e-07 61.6 62 53.2
MCO03G197 Micromonas commoda HOM05D003353 ORTHO05D003751 4.7e-06 58.2 238 26.1


User provided reference genes

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