Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 4.3e-161 571.2 283 100.0
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.2e-107 393.7 277 74.0
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 4.7e-107 391.7 277 73.6
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.2e-100 369.0 275 68.4
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.6e-99 366.7 275 68.0
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 1.0e-93 347.4 273 66.3
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.3e-93 347.1 273 65.9
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 4.7e-91 338.6 274 63.9
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.4e-82 310.5 273 61.2
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.5e-81 307.0 275 62.5
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 2.0e-81 306.6 275 61.1
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 4.4e-81 305.4 274 61.7
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.7e-80 303.5 261 63.6
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 1.7e-80 303.5 273 60.8
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 2.7e-78 296.2 273 61.2
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 3.5e-78 295.8 275 59.3
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 3.5e-78 295.8 276 58.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 5.0e-77 292.0 277 59.2
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 5.0e-77 292.0 277 60.6
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 1.1e-76 290.8 274 60.6
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.1e-76 290.8 276 60.9
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.6e-75 287.0 275 58.9
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 8.0e-75 284.6 213 65.7
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 8.0e-75 284.6 276 57.6
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 8.0e-75 284.6 278 58.3
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.4e-74 283.9 270 59.3
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 3.1e-74 282.7 281 57.7
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 8.9e-74 281.2 276 59.4
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.5e-73 280.4 279 56.3
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 2.6e-73 279.6 275 57.1
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 2.6e-73 279.6 285 58.6
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.4e-73 279.3 273 57.9
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.9e-72 276.2 276 55.4
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 4.1e-71 272.3 213 63.4
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 9.2e-71 271.2 178 74.7
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 3.5e-70 269.2 223 64.1
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 3.5e-70 269.2 273 54.9
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 6.0e-70 268.5 280 56.4
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 7.8e-70 268.1 287 57.5
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.3e-69 266.5 275 54.5
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 5.0e-69 265.4 274 53.3
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 6.6e-69 265.0 276 54.0
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 8.6e-69 264.6 274 53.6
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 2.5e-68 263.1 278 55.8
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 7.3e-68 261.5 275 53.8
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.6e-67 260.4 278 55.0
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.8e-66 256.9 190 68.4
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.8e-66 256.9 174 71.8
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 8.9e-66 254.6 274 53.6
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 8.9e-66 254.6 219 61.2
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 2.0e-65 253.4 276 53.3
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 4.4e-65 252.3 191 66.5
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 9.9e-65 251.1 197 66.0
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.3e-64 250.8 176 72.2
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 1.3e-64 250.8 176 72.2
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.7e-64 250.4 187 66.8
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 3.2e-63 246.1 274 52.2
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 3.5e-62 242.7 181 66.9
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.0e-61 241.1 154 76.6
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.3e-61 240.7 180 67.2
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 3.0e-61 239.6 176 67.6
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 3.0e-61 239.6 274 51.5
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 5.1e-61 238.8 275 50.2
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 6.6e-61 238.4 278 50.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 6.6e-61 238.4 281 50.9
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 8.6e-61 238.0 279 50.5
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 1.1e-60 237.7 190 65.8
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.9e-60 236.9 199 63.3
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 3.3e-60 236.1 183 66.1
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 9.5e-60 234.6 155 72.9
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.2e-59 234.2 275 51.3
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.6e-59 233.8 199 61.8
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 2.1e-59 233.4 282 51.1
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 2.8e-59 233.0 156 74.4
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 6.2e-59 231.9 273 50.5
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.1e-58 231.1 273 49.5
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.1e-58 231.1 271 50.6
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 1.4e-58 230.7 173 67.1
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.8e-58 230.3 273 49.8
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.8e-58 230.3 135 79.3
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.4e-58 229.9 273 49.5
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 2.0e-57 226.9 192 62.0
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 2.6e-57 226.5 187 62.6
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 3.4e-57 226.1 177 65.0
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 4.4e-57 225.7 185 62.2
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 3.8e-56 222.6 176 63.1
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.4e-55 220.7 190 61.6
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 3.2e-55 219.5 273 49.8
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 9.2e-55 218.0 191 59.2
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 2.7e-54 216.5 144 71.5
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 7.8e-54 214.9 169 64.5
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 8.7e-53 211.5 175 61.7
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.5e-52 209.9 175 61.1
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.2e-51 207.6 273 48.4
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.8e-50 203.8 181 58.6
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.4e-50 203.4 289 42.6
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 2.2e-48 196.8 225 50.2
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 2.2e-48 196.8 173 55.5
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 1.6e-43 180.6 224 51.3
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 4.0e-42 176.0 176 52.3
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.3e-40 171.0 164 51.8
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 2.2e-40 170.2 232 49.6
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 1.4e-39 167.5 137 59.9
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 7.9e-38 161.8 136 52.9
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 5.3e-34 149.1 136 50.0
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 1.4e-31 141.0 132 50.8
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.8e-29 134.0 137 46.0
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.1e-26 123.2 104 62.5
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 6.9e-26 122.1 127 59.8
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.9e-23 114.0 133 38.3
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 2.2e-16 90.5 120 37.5
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 5.0e-16 89.4 50 74.0
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.1e-15 88.2 125 37.6
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.7e-14 83.6 50 72.0
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.7e-11 74.3 36 88.9
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 9.1e-10 68.6 35 80.0


User provided reference genes

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