Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 2.6e-158 562.0 284 100.0
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 6.1e-107 391.3 224 90.6
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.0e-106 390.6 238 85.7
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.3e-106 389.4 221 91.4
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.5e-105 386.7 221 89.6
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 5.7e-105 384.8 221 87.8
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.3e-104 383.6 221 87.8
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.3e-104 383.6 221 87.8
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.7e-104 383.3 221 88.7
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 6.3e-104 381.3 221 86.9
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 6.3e-104 381.3 221 87.3
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 8.3e-104 380.9 221 87.8
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.4e-103 379.4 221 86.4
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 3.1e-103 379.0 224 87.5
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.1e-103 379.0 221 87.3
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.6e-102 376.7 221 86.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.6e-102 376.7 221 86.4
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.0e-102 376.3 223 85.2
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.5e-102 375.6 221 86.9
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 7.7e-102 374.4 223 87.0
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 7.7e-102 374.4 232 82.3
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.0e-101 374.0 232 82.3
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.3e-101 373.6 221 84.6
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.9e-101 372.5 221 84.6
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 2.9e-101 372.5 300 70.7
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 8.6e-101 370.9 221 87.8
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 1.1e-100 370.5 223 87.9
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.1e-100 370.5 234 81.6
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.1e-100 370.5 221 85.5
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 1.5e-100 370.2 220 86.4
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.3e-100 368.6 221 84.6
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 9.5e-100 367.5 221 85.5
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.2e-99 367.1 212 88.7
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.6e-99 366.7 221 87.3
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 3.6e-99 365.5 221 85.5
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 4.7e-99 365.2 215 87.0
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 8.0e-99 364.4 221 84.6
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.4e-98 363.6 212 87.7
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.4e-98 363.6 221 84.6
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.4e-98 363.6 221 84.6
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.4e-98 363.6 215 88.4
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 2.3e-98 362.8 242 79.8
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.3e-98 362.8 221 83.7
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 2.3e-98 362.8 213 87.8
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.0e-98 362.5 215 86.5
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 5.2e-98 361.7 221 83.7
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 5.2e-98 361.7 221 83.7
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 6.8e-98 361.3 221 85.1
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 8.9e-98 360.9 222 86.5
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 2.0e-97 359.8 241 79.7
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.6e-97 359.4 221 85.1
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.6e-97 359.4 221 85.1
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 2.6e-97 359.4 221 84.2
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 3.4e-97 359.0 220 86.4
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 3.4e-97 359.0 221 81.9
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 3.4e-97 359.0 221 81.9
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 3.4e-97 359.0 221 83.7
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.3e-96 357.1 217 85.3
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 2.9e-96 355.9 209 88.0
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.9e-96 355.9 215 85.1
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.7e-96 355.5 224 83.0
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 3.7e-96 355.5 220 82.7
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.1e-95 354.0 220 82.7
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.4e-95 353.6 215 84.2
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.8e-95 353.2 199 92.5
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 3.2e-95 352.4 211 85.3
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 5.4e-95 351.7 223 80.7
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.2e-94 350.5 204 89.2
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 1.2e-94 350.5 198 90.9
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.6e-94 350.1 238 78.6
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 4.6e-94 348.6 212 84.0
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 4.6e-94 348.6 222 80.6
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 4.6e-94 348.6 195 90.8
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.3e-93 346.3 215 83.3
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 3.0e-93 345.9 217 80.6
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 5.0e-93 345.1 220 80.0
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 6.6e-93 344.7 217 81.1
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 8.6e-93 344.4 231 76.6
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 8.6e-93 344.4 215 82.8
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.1e-92 344.0 218 81.7
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.5e-92 343.6 217 81.1
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.9e-92 343.2 217 82.5
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 2.5e-92 342.8 209 83.7
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 2.5e-92 342.8 217 82.5
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 4.3e-92 342.0 217 82.5
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 5.6e-92 341.7 209 83.7
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 5.6e-92 341.7 209 83.7
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 7.3e-92 341.3 217 80.6
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.5e-92 340.9 218 80.7
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.6e-91 340.1 217 81.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 1.6e-91 340.1 197 88.3
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.1e-91 339.7 214 84.6
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 2.8e-91 339.3 216 81.0
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 4.7e-91 338.6 220 81.4
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 4.7e-91 338.6 209 82.8
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 4.7e-91 338.6 222 80.6
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 6.2e-91 338.2 219 79.0
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 1.4e-90 337.0 216 81.5
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.8e-90 336.7 208 82.7
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.3e-90 336.3 217 80.2
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 3.1e-90 335.9 221 78.7
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 8.9e-90 334.3 187 89.3
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 8.9e-90 334.3 215 79.1
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 9.2e-87 324.3 204 81.4
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 2.0e-86 323.2 176 94.3
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 2.0e-86 323.2 197 84.8
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.1e-82 309.3 223 72.6
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 3.1e-82 309.3 199 80.9
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.0e-82 308.9 213 76.5
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 6.8e-82 308.1 187 83.4
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 4.4e-81 305.4 227 72.7
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 5.8e-81 305.1 199 80.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 9.8e-81 304.3 346 53.8
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.4e-79 300.4 181 85.6
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.7e-77 293.5 198 80.3
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 4.3e-76 288.9 157 93.6
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.4e-74 283.9 168 86.9
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 6.0e-70 268.5 176 78.4
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.8e-67 259.6 170 79.4
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 4.7e-67 258.8 158 84.8
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 3.4e-65 252.7 134 95.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.3e-64 250.8 160 76.2
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 8.7e-61 238.0 137 90.5
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.5e-60 237.3 192 64.6
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 7.3e-60 235.0 162 70.4
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.6e-59 233.8 220 60.9
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.8e-58 230.3 191 68.6
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 9.9e-57 224.6 197 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 6.7e-45 185.3 158 63.9
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 2.9e-40 169.9 90 96.7
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 4.2e-39 166.0 89 93.3
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.0e-37 161.4 181 54.1
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.5e-33 146.0 105 70.5
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.2e-32 143.7 177 48.6
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.9e-29 132.9 106 65.1
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.0e-24 118.2 78 74.4
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 4.2e-23 112.8 78 70.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.2e-22 111.3 88 68.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 3.8e-16 89.7 132 43.2
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 2.4e-10 70.5 72 56.9
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 5.3e-10 69.3 69 50.7
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 6.5e-08 62.4 44 77.3


User provided reference genes

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