Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 6.2e-241 837.0 415 100.0
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.7e-203 710.7 415 82.9
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.1e-202 709.9 415 83.1
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 3.0e-195 685.3 415 79.3
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 8.7e-195 683.7 411 81.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 8.7e-195 683.7 415 80.0
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 7.4e-194 680.6 415 78.8
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 7.4e-194 680.6 415 79.5
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 1.5e-191 672.9 411 79.1
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 1.5e-191 672.9 415 79.0
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 3.4e-191 671.8 415 78.6
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 3.4e-191 671.8 415 77.8
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 8.4e-190 667.2 412 77.4
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.6e-188 662.9 416 76.7
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.7e-188 662.1 415 79.0
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.5e-188 661.8 412 76.5
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.6e-188 661.4 411 78.1
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 2.5e-186 655.6 414 76.1
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.6e-185 652.9 414 76.3
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 2.2e-185 652.5 417 74.8
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.2e-180 636.7 413 75.1
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 2.0e-178 629.4 415 76.1
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.4e-176 623.2 411 73.5
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 3.1e-176 622.1 413 72.4
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 7.9e-172 607.4 415 72.8
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.8e-169 599.0 409 71.4
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 7.7e-167 590.9 395 73.7
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.2e-165 585.5 411 70.8
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.1e-164 582.8 371 76.5
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 3.6e-164 582.0 415 70.1
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 4.7e-164 581.6 412 67.7
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 4.0e-163 578.6 417 68.1
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 5.2e-163 578.2 382 74.1
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.7e-161 573.2 395 70.9
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 6.3e-161 571.2 414 67.6
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 2.4e-160 569.3 401 68.3
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.0e-160 567.8 414 69.1
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 3.5e-159 565.5 395 70.4
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.0e-158 563.9 395 69.9
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.0e-158 563.9 395 69.9
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 1.3e-158 563.5 401 67.3
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 2.9e-158 562.4 398 66.8
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 3.2e-157 558.9 413 66.3
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 3.6e-156 555.4 397 69.5
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 1.2e-154 550.4 409 65.0
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.5e-154 550.1 404 65.6
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 5.7e-154 548.1 417 65.0
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 5.7e-154 548.1 400 65.8
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 8.3e-153 544.3 417 64.0
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.0e-152 541.2 407 65.8
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 7.0e-152 541.2 407 65.8
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.2e-151 540.4 409 64.3
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 4.5e-151 538.5 410 62.9
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 1.7e-150 536.6 406 63.5
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 5.0e-150 535.0 322 80.1
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 3.2e-149 532.3 411 64.0
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 5.5e-149 531.6 403 65.3
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.2e-148 530.4 417 64.3
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 2.1e-148 529.6 392 66.8
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 3.0e-147 525.8 403 62.5
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-146 523.5 406 63.1
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 2.8e-145 519.2 368 69.3
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.2e-143 513.8 392 64.3
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.0e-143 513.1 390 65.1
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.5e-143 512.3 408 62.0
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.7e-142 510.0 410 60.7
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 6.6e-142 508.1 399 62.9
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.5e-141 506.9 399 62.7
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 3.3e-141 505.8 410 60.0
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 7.3e-141 504.6 388 64.2
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 9.5e-141 504.2 411 59.9
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 1.6e-140 503.4 410 60.7
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.6e-140 502.3 376 64.1
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.6e-140 502.3 389 64.0
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.1e-140 501.5 376 64.4
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.9e-137 491.9 390 63.1
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-136 490.7 385 63.6
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.6e-135 486.9 418 57.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 5.0e-134 481.9 411 58.6
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.6e-134 481.5 413 58.8
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 6.6e-134 481.5 409 57.2
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 2.5e-133 479.6 395 59.2
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 7.3e-133 478.0 389 62.2
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.6e-132 476.9 333 68.8
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.8e-131 473.4 389 61.4
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 2.3e-131 473.0 416 57.5
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.1e-131 472.6 402 60.0
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.2e-130 470.7 393 61.3
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 9.8e-130 467.6 395 61.5
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.7e-129 466.8 386 61.4
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 2.2e-129 466.5 359 62.7
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 7.8e-127 458.0 355 65.6
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 5.0e-126 455.3 364 65.7
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 4.3e-125 452.2 411 55.0
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 5.6e-125 451.8 394 60.9
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-123 447.2 420 56.7
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 2.3e-123 446.4 412 53.2
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 8.9e-123 444.5 390 59.0
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.5e-122 443.7 390 58.7
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 2.6e-122 443.0 412 54.4
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 4.4e-122 442.2 416 57.5
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 5.8e-122 441.8 420 56.0
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 5.8e-122 441.8 390 60.5
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 9.8e-122 441.0 388 59.8
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 9.8e-122 441.0 394 58.4
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.7e-121 440.3 388 59.8
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.9e-121 439.5 421 55.6
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 9.2e-120 434.5 414 54.3
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.7e-119 433.0 390 58.7
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 3.5e-119 432.6 413 52.8
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 6.0e-119 431.8 414 53.9
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.0e-118 431.0 316 68.0
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 1.2e-116 424.1 408 53.2
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 6.2e-116 421.8 409 54.0
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 3.1e-115 419.5 388 54.1
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 2.0e-114 416.8 395 52.4
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 2.6e-114 416.4 395 52.4
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 2.6e-114 416.4 395 52.4
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 5.8e-114 415.2 395 53.2
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.2e-113 413.3 404 54.7
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 2.2e-113 413.3 397 52.6
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.4e-113 411.8 395 51.6
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 6.4e-113 411.8 397 52.9
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-112 411.0 331 62.5
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.9e-112 410.2 380 53.2
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 3.2e-112 409.5 395 53.2
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.3e-110 404.1 419 49.9
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-108 397.5 356 55.3
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.4e-107 393.3 411 46.7
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 3.1e-107 392.9 422 52.8
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 3.4e-106 389.4 402 51.5
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.1e-104 384.4 408 46.6
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 3.9e-102 375.9 292 63.0
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 5.1e-102 375.6 410 49.5
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 5.6e-101 372.1 374 50.3
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 5.6e-101 372.1 389 49.4
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.6e-100 370.5 416 48.6
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 2.4e-99 366.7 367 52.0
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 5.3e-99 365.5 391 48.6
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 2.3e-94 350.1 406 45.6
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 6.2e-92 342.0 403 42.9
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.0e-90 337.0 376 45.2
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.7e-87 326.6 280 61.1
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.7e-87 326.6 372 46.8
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.6e-84 317.4 421 43.2
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.7e-81 307.4 291 54.6
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 9.3e-80 301.6 295 56.3
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.0e-78 298.1 404 43.6
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 4.3e-77 292.7 363 44.4
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 9.6e-77 291.6 372 43.0
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 4.2e-72 276.2 232 57.3
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 2.5e-69 266.9 365 39.7
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-63 248.1 282 45.7
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 8.8e-62 241.9 365 39.5
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 2.9e-57 226.9 243 50.2
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.4e-54 218.0 232 49.1
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 2.3e-54 217.2 181 57.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.2e-54 216.1 203 56.7
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.7e-49 201.1 173 59.5
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.2e-48 196.8 307 41.0
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.0e-46 191.8 177 56.5
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 6.3e-44 182.6 127 69.3
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 8.2e-44 182.2 162 56.8
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-41 174.5 190 51.1
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 8.8e-38 162.2 309 35.3
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 4.4e-37 159.8 152 51.3
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 7.5e-37 159.1 135 57.0
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-34 151.8 114 59.6
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-33 147.9 346 32.1
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 5.2e-22 109.8 79 68.4
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 1.3e-17 95.1 61 68.9
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 5.8e-13 79.7 348 24.7
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.7e-12 78.2 255 27.8


User provided reference genes

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