Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 9.1e-66 253.4 129 100.0
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 5.3e-42 174.5 97 86.6
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 4.5e-41 171.4 97 89.7
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 5.9e-41 171.0 97 85.6
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 2.9e-40 168.7 99 85.9
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.1e-39 166.8 114 75.4
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.9e-39 166.0 120 72.5
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.2e-39 164.9 97 84.5
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.4e-37 159.8 100 82.0
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.8e-37 159.5 119 72.3
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 2.3e-37 159.1 115 76.5
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 3.0e-37 158.7 98 79.6
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 6.8e-37 157.5 98 81.6
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 8.8e-37 157.1 114 76.3
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 1.2e-36 156.8 104 81.7
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 5.7e-36 154.5 97 81.4
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.3e-35 153.3 97 77.3
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.8e-35 152.1 81 91.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 4.8e-35 151.4 104 79.8
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 8.3e-35 150.6 99 78.8
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.1e-34 150.2 120 66.7
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 3.1e-34 148.7 99 77.8
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 7.0e-34 147.5 96 74.0
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.6e-33 146.4 92 77.2
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 2.7e-33 145.6 95 80.0
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 2.7e-33 145.6 113 67.3
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 3.5e-33 145.2 97 72.2
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 3.5e-33 145.2 106 72.6
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 7.7e-33 144.1 97 75.3
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 7.7e-33 144.1 97 75.3
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 1.0e-32 143.7 88 80.7
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.7e-32 142.9 110 68.2
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.7e-32 142.9 100 72.0
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.7e-32 142.9 98 71.4
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.7e-32 142.9 93 78.5
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.7e-32 142.9 98 75.5
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 2.3e-32 142.5 93 77.4
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 2.3e-32 142.5 96 76.0
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 2.3e-32 142.5 88 79.5
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 2.9e-32 142.1 96 75.0
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 3.8e-32 141.7 84 82.1
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 8.6e-32 140.6 93 76.3
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.1e-31 140.2 85 78.8
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.5e-31 139.8 99 71.7
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.5e-31 139.8 121 66.9
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.9e-31 139.4 97 73.2
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 4.2e-31 138.3 85 78.8
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.2e-31 138.3 105 73.3
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.2e-31 138.3 98 71.4
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 4.2e-31 138.3 90 80.0
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 7.2e-31 137.5 95 74.7
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 7.2e-31 137.5 98 72.4
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 9.5e-31 137.1 92 75.0
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 9.5e-31 137.1 97 72.2
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 9.5e-31 137.1 93 72.0
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.6e-30 136.3 99 72.7
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.6e-30 136.3 115 64.3
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.6e-30 136.3 99 73.7
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 1.6e-30 136.3 99 70.7
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 2.1e-30 136.0 97 72.2
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.8e-30 135.6 98 71.4
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 3.6e-30 135.2 88 76.1
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 8.0e-30 134.0 98 71.4
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 8.0e-30 134.0 97 71.1
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.0e-29 133.7 101 70.3
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 1.4e-29 133.3 101 68.3
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.8e-29 132.9 96 69.8
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.8e-29 132.9 85 77.6
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 2.3e-29 132.5 96 71.9
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 2.3e-29 132.5 88 72.7
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 2.3e-29 132.5 100 67.0
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 4.0e-29 131.7 88 72.7
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 4.0e-29 131.7 97 70.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 5.2e-29 131.3 97 71.1
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 6.8e-29 131.0 100 66.0
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 8.8e-29 130.6 100 68.0
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.2e-28 130.2 97 70.1
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.2e-28 130.2 97 69.1
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.5e-28 129.8 83 75.9
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.5e-28 129.8 92 70.7
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 1.5e-28 129.8 98 70.4
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 1.5e-28 129.8 98 69.4
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 2.0e-28 129.4 89 73.0
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 2.6e-28 129.0 89 73.0
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.6e-28 129.0 86 75.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 2.6e-28 129.0 97 72.2
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 3.4e-28 128.6 89 71.9
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 4.4e-28 128.3 90 71.1
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 9.8e-28 127.1 86 73.3
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 9.8e-28 127.1 86 73.3
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 9.8e-28 127.1 86 73.3
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 9.8e-28 127.1 98 69.4
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.3e-27 126.7 95 70.5
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 1.7e-27 126.3 89 71.9
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 1.7e-27 126.3 94 70.2
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 2.2e-27 125.9 86 72.1
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 6.3e-27 124.4 98 65.3
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 6.3e-27 124.4 102 68.6
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 6.3e-27 124.4 90 72.2
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 8.3e-27 124.0 86 72.1
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 8.3e-27 124.0 88 73.9
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.4e-26 123.2 83 74.7
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 2.4e-26 122.5 93 67.7
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 3.1e-26 122.1 97 67.0
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 2.7e-25 119.0 82 73.2
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 7.8e-25 117.5 82 72.0
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 7.8e-25 117.5 82 72.0
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 7.8e-25 117.5 82 72.0
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 7.8e-25 117.5 82 72.0
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.0e-24 117.1 97 67.0
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.3e-24 116.7 80 73.8
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.3e-24 116.7 81 70.4
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.7e-24 116.3 99 62.6
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 3.8e-24 115.2 98 59.2
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 6.6e-24 114.4 91 65.9
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.5e-23 112.5 97 63.9
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 1.6e-22 109.8 98 58.2
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.4e-18 96.7 58 84.5
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.4e-18 95.9 131 47.3
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 4.1e-18 95.1 81 64.2
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 5.4e-18 94.7 97 54.6
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 7.0e-18 94.4 93 58.1
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 3.5e-17 92.0 72 69.4
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 8.6e-16 87.4 129 42.6
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 9.5e-15 84.0 101 43.6
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 2.8e-14 82.4 86 57.0
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 1.4e-13 80.1 87 47.1
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 5.2e-13 78.2 121 41.3
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 3.4e-12 75.5 103 41.7
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 4.1e-10 68.6 51 62.7
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.0e-09 66.2 86 47.7
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 3.6e-06 55.5 63 42.9


User provided reference genes

Program Settings