Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.2e-116 423.3 241 100.0
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.3e-70 270.4 143 90.2
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 6.6e-70 268.1 234 63.2
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.1e-69 267.3 236 62.7
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.3e-69 265.8 235 63.0
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 5.6e-69 265.0 239 61.5
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 2.1e-68 263.1 142 88.0
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 4.8e-68 261.9 141 87.2
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.1e-67 260.8 234 62.4
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 4.0e-67 258.8 140 90.0
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 6.9e-67 258.1 138 89.1
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 4.4e-66 255.4 141 85.1
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 4.4e-66 255.4 143 86.7
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 5.8e-66 255.0 141 85.8
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 9.9e-66 254.2 143 83.2
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.3e-65 253.8 142 86.6
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.3e-65 253.8 141 83.0
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.7e-65 253.4 143 86.0
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 2.2e-65 253.1 141 85.8
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 3.8e-65 252.3 236 61.0
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 3.8e-65 252.3 142 85.9
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 3.8e-65 252.3 235 60.9
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 3.8e-65 252.3 202 67.3
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 6.4e-65 251.5 132 89.4
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 8.4e-65 251.1 135 88.1
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 8.4e-65 251.1 141 84.4
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.1e-64 250.8 223 59.2
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 1.1e-64 250.8 226 62.4
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 1.1e-64 250.8 226 62.4
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 1.4e-64 250.4 141 83.7
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.2e-64 249.2 135 87.4
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 7.1e-64 248.1 135 86.7
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 7.1e-64 248.1 218 61.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 9.3e-64 247.7 140 85.7
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.2e-63 247.3 235 60.4
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.6e-63 246.9 135 87.4
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.6e-63 246.9 136 87.5
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 2.7e-63 246.1 133 86.5
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 4.6e-63 245.4 138 83.3
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 4.6e-63 245.4 227 58.1
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 1.0e-62 244.2 138 83.3
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 1.0e-62 244.2 135 85.2
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 3.9e-62 242.3 228 58.8
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 6.6e-62 241.5 141 81.6
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 6.6e-62 241.5 168 73.2
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 8.7e-62 241.1 134 84.3
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 8.7e-62 241.1 142 78.9
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.1e-61 240.7 134 84.3
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.1e-61 240.7 135 83.7
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.1e-61 240.7 138 82.6
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 1.5e-61 240.4 131 86.3
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 1.9e-61 240.0 139 81.3
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 2.5e-61 239.6 131 87.0
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 2.5e-61 239.6 133 84.2
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 3.3e-61 239.2 244 57.0
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 5.6e-61 238.4 131 87.0
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 5.6e-61 238.4 131 87.0
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 7.4e-61 238.0 137 82.5
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 7.4e-61 238.0 133 85.7
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 7.4e-61 238.0 137 81.8
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 9.6e-61 237.7 225 56.9
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 9.6e-61 237.7 143 82.5
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.3e-60 237.3 235 58.3
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.8e-60 236.1 133 84.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 2.8e-60 236.1 216 60.2
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 4.8e-60 235.3 189 63.5
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 4.8e-60 235.3 212 60.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 6.2e-60 235.0 139 79.1
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 6.2e-60 235.0 129 84.5
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 8.1e-60 234.6 139 79.9
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 8.1e-60 234.6 139 79.9
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 8.1e-60 234.6 235 57.4
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.4e-59 233.8 143 78.3
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.4e-59 233.8 228 59.6
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 1.4e-59 233.8 134 82.8
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 1.8e-59 233.4 142 78.2
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.8e-59 233.4 139 78.4
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 1.8e-59 233.4 235 57.0
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 2.4e-59 233.0 126 87.3
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 3.1e-59 232.6 131 84.7
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 5.3e-59 231.9 131 84.0
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 6.9e-59 231.5 139 79.1
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 6.9e-59 231.5 132 83.3
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 2.0e-58 229.9 137 79.6
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 2.0e-58 229.9 135 80.7
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 2.6e-58 229.6 220 58.2
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 2.6e-58 229.6 220 58.2
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 3.4e-58 229.2 128 86.7
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 4.5e-58 228.8 142 78.9
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 9.9e-58 227.6 134 79.9
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 2.9e-57 226.1 127 85.8
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 4.9e-57 225.3 139 77.7
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 8.4e-57 224.6 145 74.5
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 8.4e-57 224.6 135 79.3
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 1.1e-56 224.2 142 78.9
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.4e-56 223.8 139 77.0
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.9e-56 223.4 139 77.0
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 1.9e-56 223.4 239 54.8
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 4.2e-56 222.2 213 57.3
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 4.2e-56 222.2 131 80.9
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 4.2e-56 222.2 131 80.9
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 4.2e-56 222.2 131 80.9
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 5.5e-56 221.9 219 54.8
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.2e-55 220.7 212 57.5
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 4.6e-55 218.8 128 81.2
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 7.9e-55 218.0 130 78.5
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.3e-54 217.2 134 77.6
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.3e-54 217.2 234 56.4
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 2.3e-54 216.5 213 56.3
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.1e-53 214.2 134 75.4
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.1e-53 214.2 134 75.4
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.1e-51 207.6 130 72.3
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.4e-51 207.2 114 88.6
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.6e-50 203.0 140 72.1
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.4e-48 197.2 135 68.9
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 1.6e-47 193.7 129 69.0
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.8e-46 190.3 129 69.0
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 6.3e-44 181.8 129 65.9
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 6.3e-44 181.8 129 65.9
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.8e-43 180.3 129 65.1
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 9.0e-35 151.4 101 74.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.6e-34 149.8 88 81.8
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 1.0e-33 147.9 78 89.7
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 9.4e-32 141.4 80 83.8
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 2.1e-31 140.2 118 63.6
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.2e-25 120.2 134 49.3
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 5.2e-22 109.0 120 46.7
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 2.6e-21 106.7 58 89.7
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.3e-20 104.4 140 41.4
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 2.2e-20 103.6 59 78.0
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.1e-19 101.3 56 82.1
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.3e-17 94.4 49 87.8
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 1.1e-16 91.3 56 75.0
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.3e-14 83.6 45 86.7
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 2.6e-13 80.1 105 44.8
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 2.2e-12 77.0 45 82.2
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 5.3e-11 72.4 45 68.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.5e-08 64.3 74 51.4
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 4.2e-08 62.8 33 84.8
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 4.2e-08 62.8 36 86.1


User provided reference genes

Program Settings