Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28193 Davidia involucrata HOM05D007152 ORTHO05D008912 3.4e-36 154.5 77 100.0
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 5.5e-10 67.4 53 64.2
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 7.2e-10 67.0 33 84.8
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 3.6e-09 64.7 30 86.7
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 7.9e-09 63.5 30 83.3
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 1.4e-08 62.8 33 75.8
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.8e-08 62.4 31 71.0
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.8e-08 62.4 31 71.0
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.8e-08 62.4 33 72.7
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 2.3e-08 62.0 40 65.0
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 2.3e-08 62.0 30 80.0
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 2.3e-08 62.0 42 57.1
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 3.0e-08 61.6 33 75.8
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 5.1e-08 60.8 40 65.0
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 5.1e-08 60.8 33 69.7
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 5.1e-08 60.8 33 69.7
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 5.1e-08 60.8 33 69.7
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 5.1e-08 60.8 33 69.7
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 6.7e-08 60.5 30 76.7
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 8.8e-08 60.1 30 80.0
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 8.8e-08 60.1 39 61.5
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 1.1e-07 59.7 29 79.3
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 1.1e-07 59.7 30 76.7
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 1.1e-07 59.7 30 76.7
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 1.1e-07 59.7 33 72.7
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 1.5e-07 59.3 30 80.0
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 1.5e-07 59.3 42 61.9
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 2.0e-07 58.9 29 79.3
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 2.0e-07 58.9 30 80.0
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 2.0e-07 58.9 32 68.8
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 2.0e-07 58.9 30 80.0
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 2.0e-07 58.9 30 76.7
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 2.6e-07 58.5 50 54.0
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 2.6e-07 58.5 30 73.3
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 3.3e-07 58.2 34 70.6
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 3.3e-07 58.2 29 75.9
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 3.3e-07 58.2 30 73.3
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 4.4e-07 57.8 30 76.7
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 5.7e-07 57.4 37 59.5
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 7.4e-07 57.0 29 75.9
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 7.4e-07 57.0 27 85.2
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 9.7e-07 56.6 30 70.0
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 9.7e-07 56.6 43 58.1
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 9.7e-07 56.6 43 58.1
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 9.7e-07 56.6 43 58.1
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 1.3e-06 56.2 39 56.4
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 1.3e-06 56.2 39 56.4
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 1.7e-06 55.8 30 76.7
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 1.7e-06 55.8 30 73.3
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 1.7e-06 55.8 29 72.4
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 1.7e-06 55.8 31 71.0
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 1.7e-06 55.8 29 72.4
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 1.7e-06 55.8 31 64.5
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 2.2e-06 55.5 33 66.7
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 2.8e-06 55.1 29 75.9
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 2.8e-06 55.1 29 72.4
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 3.7e-06 54.7 30 70.0
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 3.7e-06 54.7 30 73.3
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 4.8e-06 54.3 27 77.8
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 4.8e-06 54.3 27 77.8
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 4.8e-06 54.3 31 64.5
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 4.8e-06 54.3 31 64.5
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 4.8e-06 54.3 30 73.3
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 4.8e-06 54.3 30 73.3
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 4.8e-06 54.3 30 73.3
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 4.8e-06 54.3 30 73.3
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 4.8e-06 54.3 30 73.3
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 4.8e-06 54.3 29 65.5
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 4.8e-06 54.3 27 77.8
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 6.3e-06 53.9 31 64.5
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 6.3e-06 53.9 32 68.8


User provided reference genes

Program Settings