Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.4e-55 219.5 122 100.0
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.6e-17 90.5 90 63.3
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.6e-16 88.6 96 59.4
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 4.8e-16 88.2 124 50.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.1e-15 87.0 101 57.4
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.4e-15 86.7 90 62.2
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.4e-15 85.9 98 61.2
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 3.1e-15 85.5 124 47.6
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 9.0e-15 84.0 98 58.2
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.0e-14 82.8 97 54.6
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.4e-14 82.0 98 60.2
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 5.8e-14 81.3 98 60.2
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 7.6e-14 80.9 122 49.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.3e-13 80.1 98 60.2
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.7e-13 79.7 92 63.0
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 3.8e-13 78.6 121 52.1
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 4.9e-13 78.2 95 60.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.1e-12 77.0 101 56.4
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.1e-12 77.0 122 49.2
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.1e-12 77.0 98 59.2
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.4e-12 76.6 101 56.4
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.4e-12 76.6 101 56.4
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.9e-12 76.3 90 61.1
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.4e-12 75.9 126 48.4
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.2e-12 75.5 92 58.7
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.2e-12 75.1 97 58.8
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 5.4e-12 74.7 100 59.0
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.1e-12 74.3 92 62.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 7.1e-12 74.3 92 62.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 7.1e-12 74.3 90 57.8
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 9.3e-12 73.9 98 56.1
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 9.3e-12 73.9 98 57.1
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-11 73.6 83 59.0
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 1.2e-11 73.6 92 58.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-11 73.6 101 54.5
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-11 73.6 98 56.1
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.2e-11 73.6 98 56.1
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.2e-11 73.6 98 58.2
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.1e-11 72.8 98 56.1
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.1e-11 72.8 98 57.1
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.7e-11 72.4 117 49.6
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 2.7e-11 72.4 98 54.1
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 3.5e-11 72.0 124 46.8
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 3.5e-11 72.0 97 58.8
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 4.6e-11 71.6 92 54.3
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.6e-11 71.6 90 61.1
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.6e-11 71.6 85 63.5
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 4.6e-11 71.6 94 57.4
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.6e-11 71.6 98 56.1
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 4.6e-11 71.6 105 51.4
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 6.0e-11 71.2 83 57.8
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 6.0e-11 71.2 83 57.8
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 6.0e-11 71.2 83 57.8
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 6.0e-11 71.2 83 57.8
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 6.0e-11 71.2 98 57.1
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 7.9e-11 70.9 88 45.5
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 7.9e-11 70.9 100 55.0
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.0e-10 70.5 107 51.4
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.8e-10 69.7 59 78.0
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.8e-10 69.7 84 60.7
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.8e-10 69.7 97 54.6
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.8e-10 69.7 88 56.8
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 2.3e-10 69.3 90 61.1
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 3.0e-10 68.9 98 57.1
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.0e-10 68.9 98 58.2
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.0e-10 68.9 98 58.2
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.0e-10 68.9 98 58.2
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.0e-10 68.9 107 50.5
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 3.9e-10 68.6 90 60.0
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 3.9e-10 68.6 125 44.0
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 3.9e-10 68.6 98 57.1
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.9e-10 68.6 91 61.5
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 5.1e-10 68.2 89 57.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 5.1e-10 68.2 89 57.3
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 5.1e-10 68.2 98 56.1
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 5.1e-10 68.2 97 53.6
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 5.1e-10 68.2 97 53.6
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 5.1e-10 68.2 89 57.3
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 5.1e-10 68.2 90 60.0
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.1e-10 68.2 79 59.5
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 5.1e-10 68.2 98 53.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.7e-10 67.8 102 51.0
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 6.7e-10 67.8 102 48.0
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 8.7e-10 67.4 79 59.5
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 8.7e-10 67.4 92 55.4
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 8.7e-10 67.4 79 59.5
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 8.7e-10 67.4 79 59.5
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 8.7e-10 67.4 79 59.5
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 8.7e-10 67.4 90 56.7
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 8.7e-10 67.4 100 52.0
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 8.7e-10 67.4 98 54.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 8.7e-10 67.4 60 73.3
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 8.7e-10 67.4 90 58.9
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 1.1e-09 67.0 93 59.1
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 1.1e-09 67.0 93 59.1
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-09 67.0 85 58.8
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.1e-09 67.0 98 54.1
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.1e-09 67.0 105 49.5
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.5e-09 66.6 98 54.1
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.5e-09 66.6 98 54.1
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.9e-09 66.2 83 55.4
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 2.5e-09 65.9 97 52.6
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 2.5e-09 65.9 92 56.5
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.5e-09 65.9 98 53.1
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 3.3e-09 65.5 100 51.0
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 3.3e-09 65.5 92 56.5
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 3.3e-09 65.5 106 51.9
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 4.3e-09 65.1 117 47.0
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 4.3e-09 65.1 98 56.1
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.3e-09 65.1 85 60.0
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.4e-09 64.3 60 71.7
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 9.6e-09 63.9 112 50.9
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.6e-08 63.2 100 51.0
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.6e-08 63.2 89 55.1
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.6e-08 63.2 64 60.9
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.8e-08 62.4 64 67.2
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 2.8e-08 62.4 92 53.3
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 6.2e-08 61.2 80 57.5
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 8.1e-08 60.8 101 49.5
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.1e-07 60.5 104 48.1
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.1e-07 60.5 78 56.4
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.4e-07 60.1 104 49.0
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.4e-07 60.1 66 63.6
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.4e-07 59.3 79 59.5
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 3.1e-07 58.9 93 52.7
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.1e-07 58.9 107 46.7
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 5.3e-07 58.2 79 59.5
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.3e-07 58.2 89 52.8
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 5.3e-07 58.2 93 48.4
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 5.3e-07 58.2 99 51.5
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.9e-07 57.8 81 61.7
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 6.9e-07 57.8 79 57.0
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 9.0e-07 57.4 84 56.0
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 1.5e-06 56.6 86 57.0
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.0e-06 56.2 79 55.7
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 2.0e-06 56.2 75 57.3
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.6e-06 55.8 92 53.3
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.5e-06 55.1 92 53.3
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 7.6e-06 54.3 90 54.4


User provided reference genes

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