Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 2.5e-101 372.1 186 100.0
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.6e-68 263.1 210 70.5
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.5e-61 239.2 210 64.3
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.8e-60 235.0 210 61.9
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 3.8e-57 225.3 213 59.6
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 3.8e-57 225.3 218 58.3
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 8.5e-57 224.2 210 57.6
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 3.2e-56 222.2 216 57.9
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 3.6e-55 218.8 216 57.4
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.0e-54 215.7 186 61.8
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 5.1e-54 214.9 214 59.8
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 8.8e-54 214.2 213 56.3
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.1e-53 213.8 213 56.8
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.4e-53 211.8 216 55.6
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 5.7e-53 211.5 213 56.8
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 9.7e-53 210.7 214 58.9
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.7e-52 208.8 213 54.9
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 3.7e-52 208.8 206 56.8
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 3.7e-52 208.8 213 54.5
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 3.7e-52 208.8 216 55.6
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 3.7e-52 208.8 214 55.1
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 4.8e-52 208.4 216 55.1
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 4.8e-52 208.4 216 55.1
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.1e-51 207.2 216 55.1
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 1.2e-50 203.8 213 53.5
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.5e-50 202.2 214 52.8
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 7.7e-50 201.1 208 57.2
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.0e-49 200.7 193 59.6
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.3e-49 200.3 212 54.2
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 2.9e-49 199.1 213 52.6
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 3.8e-49 198.7 213 54.5
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 3.8e-49 198.7 213 54.0
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 8.5e-49 197.6 209 54.5
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.4e-48 196.8 209 56.5
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.4e-48 196.8 214 53.3
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 2.5e-48 196.1 213 53.1
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 7.2e-48 194.5 218 53.7
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 9.4e-48 194.1 220 53.6
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 9.4e-48 194.1 213 54.0
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 9.4e-48 194.1 215 53.5
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 2.1e-47 193.0 189 60.8
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.1e-47 193.0 215 53.5
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.1e-47 193.0 216 52.8
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.1e-47 193.0 215 53.0
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 2.1e-47 193.0 213 53.5
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 6.1e-47 191.4 216 52.3
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 1.0e-46 190.7 213 54.0
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.0e-46 190.7 216 52.3
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 1.4e-46 190.3 213 54.5
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.4e-46 190.3 215 51.6
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 2.3e-46 189.5 219 52.1
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 5.2e-46 188.3 212 54.2
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 6.7e-46 188.0 209 51.7
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 8.8e-46 187.6 218 50.9
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 8.8e-46 187.6 214 53.3
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.1e-45 187.2 212 51.9
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.1e-45 187.2 214 51.4
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.0e-45 186.4 212 53.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.4e-45 185.3 213 50.7
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 1.3e-44 183.7 214 51.4
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.7e-44 183.3 208 52.4
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 1.7e-44 183.3 191 55.5
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.7e-44 183.3 213 51.2
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 3.7e-44 182.2 195 54.4
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 1.1e-43 180.6 225 48.9
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.8e-43 179.9 210 51.0
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.4e-43 179.5 209 50.7
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 7.0e-43 177.9 221 48.0
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 7.0e-43 177.9 203 49.8
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 9.1e-43 177.6 212 50.9
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.2e-42 177.2 212 50.9
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 2.0e-42 176.4 214 48.6
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.5e-42 175.6 190 53.7
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 4.5e-42 175.3 217 50.2
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.0e-41 174.1 188 53.2
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 1.3e-41 173.7 185 57.3
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.7e-41 173.3 188 54.3
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 3.8e-41 172.2 212 49.1
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 5.0e-41 171.8 222 48.2
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 8.5e-41 171.0 209 50.2
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 4.2e-40 168.7 189 50.3
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 5.5e-40 168.3 191 51.8
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 3.6e-39 165.6 183 54.1
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 4.7e-39 165.2 183 54.6
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.7e-39 165.2 192 50.5
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 8.0e-39 164.5 189 51.9
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 2.3e-38 162.9 214 48.6
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 2.3e-38 162.9 214 48.6
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 4.0e-38 162.2 234 44.9
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 4.0e-38 162.2 192 51.0
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-37 160.6 189 50.3
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 1.5e-37 160.2 212 47.2
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 4.4e-37 158.7 190 48.9
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 5.7e-37 158.3 224 44.6
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 9.7e-37 157.5 191 48.7
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.3e-36 157.1 193 51.8
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.7e-36 156.8 250 44.0
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 8.3e-36 154.5 212 47.2
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.8e-35 153.3 194 47.9
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.4e-35 152.9 215 45.1
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 5.3e-35 151.8 219 43.8
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 5.3e-35 151.8 194 51.5
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 1.2e-34 150.6 211 46.4
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.6e-34 150.2 215 44.2
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.0e-34 149.8 204 46.1
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 2.0e-34 149.8 191 47.6
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 3.5e-34 149.1 215 43.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 3.5e-34 149.1 205 44.9
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 4.5e-34 148.7 189 50.3
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.9e-34 148.3 209 44.0
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 7.7e-34 147.9 206 44.2
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 7.7e-34 147.9 184 48.9
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.0e-33 147.5 196 45.4
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.2e-33 146.4 209 43.5
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.9e-33 146.0 227 43.6
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 3.8e-33 145.6 217 43.8
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 1.1e-32 144.1 191 46.6
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 1.5e-32 143.7 210 46.2
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.2e-32 142.1 205 45.9
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 4.2e-32 142.1 204 44.1
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 7.2e-32 141.4 212 43.4
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 9.4e-32 141.0 214 43.9
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 9.4e-32 141.0 195 47.2
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 9.4e-32 141.0 189 47.1
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.6e-31 139.0 204 46.1
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 4.7e-31 138.7 197 46.2
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 6.1e-31 138.3 196 44.9
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.0e-30 137.5 196 46.4
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.8e-30 136.7 202 43.6
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.0e-30 136.0 155 52.9
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 2.6e-29 132.9 213 42.3
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 4.4e-29 132.1 211 41.7
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 7.5e-29 131.3 194 45.4
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 7.5e-29 131.3 214 41.1
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 9.8e-29 131.0 201 41.8
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 4.8e-28 128.6 214 42.1
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 6.3e-28 128.3 211 40.3
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 6.3e-28 128.3 201 41.3
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 6.3e-28 128.3 201 41.3
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 1.4e-27 127.1 211 42.7
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 1.4e-27 127.1 180 45.6
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.8e-27 126.7 211 42.7
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 2.4e-27 126.3 205 40.5
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 3.1e-27 125.9 206 40.3
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.2e-26 124.0 205 43.4
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.6e-26 123.6 210 43.8
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 2.3e-25 119.8 230 41.3
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.9e-25 119.4 211 42.2
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 3.8e-25 119.0 179 42.5
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 4.2e-24 115.5 226 38.9
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 6.1e-23 111.7 211 41.7
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 5.2e-22 108.6 189 41.3
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 8.9e-22 107.8 155 45.2
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.2e-21 107.5 181 39.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.6e-21 106.3 169 44.4
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 4.4e-21 105.5 205 39.5
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 1.3e-20 104.0 181 39.2
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 1.4e-19 100.5 212 38.2
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.4e-19 100.5 179 39.1
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 2.0e-18 96.7 221 37.1
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.0e-17 94.4 216 35.6
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 3.9e-17 92.4 225 38.7
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 4.7e-15 85.5 182 36.3
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.8e-14 83.6 164 39.0
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 2.2e-12 76.6 95 51.6
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 4.9e-12 75.5 106 47.2
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.1e-11 74.3 47 74.5
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.1e-11 74.3 176 36.9
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 1.4e-11 73.9 106 46.2
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 7.0e-11 71.6 106 45.3
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 1.2e-10 70.9 93 47.3
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 3.5e-10 69.3 48 75.0
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 6.0e-10 68.6 98 38.8
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 3.6e-07 59.3 197 30.5
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 2.3e-06 56.6 85 42.4
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 5.2e-06 55.5 96 36.5
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 6.8e-06 55.1 83 42.2
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 8.9e-06 54.7 94 38.3


User provided reference genes

Program Settings