Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 2.7e-248 861.7 471 100.0
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.7e-146 523.5 403 75.9
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.0e-144 514.6 420 72.9
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 2.2e-130 469.9 350 79.7
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 8.5e-130 468.0 453 62.3
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.0e-127 461.1 455 61.1
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 8.8e-127 458.0 417 68.8
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.9e-121 440.3 387 64.6
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 4.2e-121 439.1 422 64.0
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.6e-120 437.2 413 65.1
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 2.1e-120 436.8 378 64.8
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 2.0e-118 430.3 426 63.4
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 3.7e-117 426.0 384 63.0
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.3e-117 425.2 423 63.6
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 8.3e-117 424.9 423 62.4
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 1.1e-116 424.5 525 55.4
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 7.0e-116 421.8 423 63.4
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 2.7e-115 419.9 419 64.2
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.7e-115 419.9 423 63.4
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 2.7e-115 419.9 423 61.7
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 3.5e-115 419.5 418 61.5
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.0e-114 417.9 418 61.7
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.0e-114 417.9 424 62.3
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 1.0e-114 417.9 345 67.5
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 1.3e-114 417.5 422 62.1
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.9e-114 416.4 434 62.2
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 3.8e-114 416.0 340 67.9
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 6.6e-114 415.2 418 61.2
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.5e-113 413.3 418 60.0
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 7.3e-113 411.8 421 63.2
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 3.6e-112 409.5 422 61.4
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 4.7e-112 409.1 427 60.9
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 4.0e-111 406.0 418 60.5
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.5e-110 404.1 429 60.1
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 7.5e-110 401.7 408 61.5
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.7e-109 400.6 418 61.0
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.9e-109 399.8 418 59.6
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 6.4e-109 398.7 427 60.4
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 8.3e-109 398.3 418 60.8
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 1.1e-108 397.9 418 61.0
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.4e-108 396.7 379 59.4
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 5.4e-108 395.6 376 61.2
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 1.2e-107 394.4 417 62.1
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.0e-106 391.3 430 61.9
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 5.0e-106 389.0 418 59.3
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 3.3e-105 386.3 413 61.7
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 3.6e-104 382.9 421 59.1
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.7e-101 374.0 428 59.8
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 2.2e-101 373.6 423 58.4
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 7.0e-100 368.6 435 56.3
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 3.5e-99 366.3 422 59.0
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.5e-97 360.9 340 61.2
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 2.5e-97 360.1 356 57.6
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 5.6e-97 359.0 345 59.1
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 2.1e-96 357.1 423 56.0
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 4.7e-96 355.9 251 77.7
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 4.7e-96 355.9 408 53.4
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 8.9e-95 351.7 416 54.8
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.5e-94 350.9 416 56.0
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 9.9e-94 348.2 410 53.7
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 2.9e-93 346.7 467 50.7
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 2.7e-91 340.1 468 51.7
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 7.8e-91 338.6 419 54.9
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 3.0e-90 336.7 370 56.5
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 3.9e-90 336.3 404 54.5
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 2.1e-88 330.5 434 50.0
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.4e-87 327.8 462 50.2
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.2e-86 324.7 424 53.3
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 5.8e-86 322.4 369 53.7
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 2.9e-85 320.1 366 55.2
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 1.6e-83 314.3 252 69.4
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 2.3e-82 310.5 456 45.8
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 5.6e-81 305.8 393 50.1
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 8.1e-80 302.0 261 60.5
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 4.0e-79 299.7 429 49.9
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 7.6e-78 295.4 319 53.0
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 1.7e-77 294.3 421 51.1
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 4.9e-77 292.7 399 49.9
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 5.6e-73 279.3 416 48.1
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.6e-72 277.7 421 51.1
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.6e-72 276.6 421 49.6
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 3.6e-72 276.6 426 50.2
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 8.1e-72 275.4 423 48.9
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 2.6e-70 270.4 407 49.6
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 7.6e-70 268.9 421 49.6
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 7.6e-70 268.9 418 47.8
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 3.8e-69 266.5 460 42.6
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 4.9e-69 266.2 420 46.7
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 7.1e-68 262.3 418 50.5
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 1.2e-67 261.5 385 46.0
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 4.6e-67 259.6 230 60.4
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 2.3e-66 257.3 418 48.3
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 3.0e-66 256.9 231 64.9
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 6.7e-66 255.8 425 47.3
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.1e-65 255.0 421 47.7
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.4e-63 248.1 335 52.5
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 2.6e-62 243.8 309 50.2
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 2.2e-61 240.7 294 49.3
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 2.9e-61 240.4 235 59.6
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.1e-60 238.4 294 50.0
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.1e-60 238.4 294 50.0
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 2.5e-60 237.3 294 48.6
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 2.3e-58 230.7 301 48.8
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 3.3e-57 226.9 406 45.1
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 6.9e-55 219.2 399 41.9
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 2.6e-54 217.2 262 55.7
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 4.5e-54 216.5 437 37.5
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 8.4e-53 212.2 274 48.2
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 1.9e-52 211.1 416 44.2
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.9e-52 211.1 427 44.0
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.2e-52 210.3 228 54.8
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 1.8e-50 204.5 420 43.6
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 6.7e-50 202.6 419 42.5
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 1.5e-46 191.4 399 39.8
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 7.7e-46 189.1 234 48.3
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 3.2e-44 183.7 229 46.3
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 4.6e-43 179.9 354 38.4
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.1e-42 176.4 398 41.5
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.0e-41 174.5 260 42.3
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 4.8e-40 169.9 318 40.9
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 2.9e-29 134.0 139 57.6
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.5e-28 129.8 389 37.0
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 3.5e-22 110.5 85 65.9
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 8.5e-21 105.9 84 70.2
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.1e-20 105.5 222 40.1
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 6.1e-19 99.8 184 38.6
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 6.1e-19 99.8 245 35.1
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.3e-16 89.7 89 59.6
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 1.2e-14 85.5 105 45.7
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.6e-14 85.1 150 40.7
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 2.7e-14 84.3 183 29.5
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 4.5e-14 83.6 170 39.4
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 1.7e-13 81.6 171 36.8
Lsat_1_v5_gn_4_93920 Lactuca sativa HOM05D004981 ORTHO05D005635 5.0e-13 80.1 174 44.3
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 1.6e-11 75.1 170 33.5
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 3.6e-11 73.9 85 54.1
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 2.2e-08 64.7 56 53.6
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 1.1e-07 62.4 93 44.1
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 5.4e-07 60.1 64 48.4
BolC5t29476H Brassica oleracea HOM05D004981 ORTHO05D005635 4.5e-06 57.0 39 59.0
BraA08t32917Z Brassica rapa HOM05D004981 ORTHO05D005635 5.9e-06 56.6 104 40.4
Lsat_1_v5_gn_1_35040 Lactuca sativa HOM05D004981 ORTHO05D005635 7.7e-06 56.2 51 62.7


User provided reference genes

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