Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 6.4e-174 614.0 314 100.0
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.8e-145 518.1 311 86.2
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 7.0e-128 461.1 315 75.9
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 9.1e-128 460.7 314 77.4
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 3.2e-125 452.2 315 75.6
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.4e-123 446.8 326 73.9
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.4e-123 446.8 326 73.9
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 7.7e-119 431.0 315 73.3
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.5e-117 426.0 315 71.4
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.1e-116 422.9 311 71.4
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 3.6e-116 422.2 313 71.9
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.0e-115 419.1 313 71.2
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.0e-114 416.4 312 72.1
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.6e-114 416.0 314 69.1
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 3.4e-114 415.6 307 72.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 5.7e-114 414.8 285 75.4
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.3e-113 413.7 312 70.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 2.8e-113 412.5 306 72.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 8.3e-113 411.0 306 72.9
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.8e-112 409.8 312 71.5
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 3.1e-112 409.1 312 71.5
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 7.0e-112 407.9 298 73.2
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 7.0e-112 407.9 285 73.7
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.6e-111 406.8 313 71.6
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.6e-111 406.8 313 71.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.6e-111 406.8 313 71.2
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.6e-111 406.8 329 67.8
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.6e-111 406.8 307 71.0
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 3.5e-111 405.6 317 69.4
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 7.7e-111 404.4 315 69.5
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.0e-110 404.1 303 71.3
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.7e-110 403.3 308 70.8
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.2e-110 402.9 256 76.6
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 5.0e-110 401.7 254 80.7
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 5.0e-110 401.7 316 68.0
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 9.4e-109 397.5 300 71.0
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 1.6e-108 396.7 308 69.2
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.7e-108 396.0 286 73.4
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 3.6e-108 395.6 313 67.1
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 3.6e-108 395.6 252 79.0
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.0e-107 394.0 306 68.3
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.8e-107 393.3 256 77.7
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.0e-107 392.5 315 66.0
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 5.2e-107 391.7 322 65.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 8.8e-107 391.0 313 67.7
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 8.8e-107 391.0 305 66.6
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.5e-106 390.2 252 77.8
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.0e-106 389.8 314 67.8
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.7e-105 386.7 317 64.4
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.7e-105 386.7 319 65.5
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.7e-105 386.7 312 67.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 3.7e-105 385.6 253 78.7
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 4.9e-105 385.2 311 65.6
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 6.3e-105 384.8 306 68.3
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 8.3e-105 384.4 307 66.1
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.4e-104 383.6 256 76.2
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 2.4e-104 382.9 256 77.3
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 9.1e-104 380.9 313 62.9
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.6e-103 380.2 298 68.1
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.6e-103 380.2 317 66.9
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.5e-103 378.6 317 65.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 4.5e-103 378.6 296 67.6
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 5.9e-103 378.3 312 64.4
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.0e-102 377.5 314 65.6
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.9e-102 375.9 314 65.3
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 3.8e-102 375.6 314 65.3
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 6.6e-102 374.8 256 73.4
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 2.5e-101 372.9 307 65.8
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 5.6e-101 371.7 314 65.3
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 9.5e-101 370.9 310 63.2
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-100 370.5 306 63.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-100 370.2 305 63.3
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.6e-100 370.2 305 63.3
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.1e-100 369.8 315 65.7
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 6.1e-100 368.2 256 71.9
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.4e-99 367.1 250 72.4
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 3.0e-99 365.9 254 70.5
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 3.0e-99 365.9 274 69.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 6.8e-99 364.8 256 70.7
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.8e-99 364.8 304 63.2
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.2e-98 364.0 298 63.4
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.2e-98 364.0 236 77.5
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.5e-98 363.6 320 63.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.6e-98 362.8 365 54.0
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 4.4e-98 362.1 304 61.2
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 9.8e-98 360.9 312 61.2
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 2.2e-97 359.8 255 70.2
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.8e-96 356.7 276 68.8
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.8e-96 356.7 326 61.7
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.4e-96 356.3 316 61.1
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 3.2e-96 355.9 236 72.9
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 2.7e-95 352.8 236 75.0
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.3e-94 350.5 272 69.9
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 6.6e-94 348.2 302 59.6
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 6.6e-94 348.2 316 59.8
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.5e-93 347.1 313 59.4
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.9e-93 346.7 273 67.0
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.9e-93 346.7 267 64.8
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.3e-93 345.9 289 66.8
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 7.3e-93 344.7 314 58.0
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 7.3e-93 344.7 302 59.3
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 9.5e-93 344.4 308 59.7
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.2e-92 344.0 328 58.5
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.2e-92 344.0 311 60.5
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.6e-92 342.4 314 59.9
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 4.7e-92 342.0 281 66.9
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 4.7e-92 342.0 306 59.5
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.4e-91 340.5 257 65.8
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.8e-91 340.1 387 51.2
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.2e-91 338.6 257 65.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 6.8e-91 338.2 303 58.7
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 6.8e-91 338.2 303 58.7
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.2e-90 337.4 305 59.7
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.5e-90 337.0 315 58.4
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 2.0e-90 336.7 315 58.4
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.4e-90 335.5 252 69.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 8.3e-89 331.3 217 77.9
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 8.3e-89 331.3 318 58.2
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.9e-88 330.1 247 69.2
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 4.1e-88 328.9 309 58.6
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.1e-88 328.9 354 56.8
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.5e-87 325.9 311 58.5
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.7e-86 323.6 389 53.2
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.3e-85 318.9 310 58.4
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.1e-84 316.6 406 46.8
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 4.7e-84 315.5 240 67.9
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 7.5e-82 308.1 294 56.1
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 9.8e-82 307.8 246 61.4
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.2e-79 300.8 225 63.6
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.0e-78 296.2 227 67.4
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 1.5e-77 293.9 299 54.2
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.3e-70 270.0 460 39.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 6.8e-67 258.5 303 44.9
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 3.2e-64 249.6 219 58.9
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 2.7e-63 246.5 191 70.2
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 6.0e-63 245.4 313 47.3
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-61 241.1 223 59.2
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.1e-59 234.6 173 64.7
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.8e-59 233.8 239 49.4
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 3.5e-55 219.5 260 47.3
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-54 217.6 135 80.0
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.3e-54 216.9 236 46.6
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.1e-51 208.0 228 46.5
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 2.4e-51 206.8 143 74.1
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 2.5e-45 186.8 189 48.1
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 1.5e-37 161.0 121 66.9
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.5e-29 134.4 197 43.1
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.2e-23 114.8 75 76.0
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 3.3e-21 106.7 107 47.7
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 1.7e-20 104.4 91 65.9
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.1e-19 99.8 76 65.8
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.7e-15 87.0 70 64.3
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.3e-14 84.0 184 37.0
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.3e-13 80.1 72 55.6
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 9.7e-13 78.6 74 47.3
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.3e-12 75.9 50 80.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 2.6e-10 70.5 52 63.5
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 7.7e-10 68.9 203 27.6
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 1.4e-06 58.2 38 71.1
TAR623G1365 Trochodendron aralioides HOM05D004474 ORTHO05D414940 1.8e-06 57.8 63 55.6
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 3.0e-06 57.0 203 27.6
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 4.0e-06 56.6 203 25.1
Atru.chr4.507 Acer truncatum HOM05D004474 ORTHO05D052242 8.8e-06 55.5 32 87.5


User provided reference genes

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