Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.1e-41 172.9 94 100.0
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.1e-34 147.5 96 86.5
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.3e-33 144.8 94 84.0
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 6.2e-32 140.6 94 85.1
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.1e-31 139.8 99 81.8
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 6.9e-31 137.1 94 83.0
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.9e-28 129.0 94 75.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.5e-28 128.6 94 74.5
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.2e-28 128.3 94 77.7
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 4.2e-28 127.9 94 73.4
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 5.5e-28 127.5 94 74.5
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.2e-27 126.3 94 73.4
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 2.7e-27 125.2 94 74.5
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 2.7e-27 125.2 94 77.7
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 7.9e-27 123.6 94 74.5
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.3e-26 122.9 94 73.4
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 5.1e-26 120.9 94 72.3
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 5.1e-26 120.9 94 72.3
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 8.7e-26 120.2 96 71.9
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 8.7e-26 120.2 94 71.3
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 7.4e-25 117.1 95 70.5
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.6e-24 115.9 96 70.8
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.6e-24 115.9 95 70.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 2.1e-24 115.5 94 69.1
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 4.8e-24 114.4 96 68.8
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 6.2e-24 114.0 94 70.2
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 8.2e-24 113.6 94 67.0
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 71.3
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.4e-23 112.8 94 67.0
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.4e-23 112.8 95 68.4
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.4e-23 112.1 94 66.0
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.4e-23 112.1 94 66.0
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 2.4e-23 112.1 94 69.1
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.4e-23 112.1 94 71.3
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 3.1e-23 111.7 94 67.0
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 3.1e-23 111.7 94 67.0
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 67.0
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 66.0
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 6.9e-23 110.5 92 68.5
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.5e-22 109.4 94 70.2
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 66.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 66.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 3.4e-22 108.2 118 57.6
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 3.4e-22 108.2 94 66.0
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 3.4e-22 108.2 94 67.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 63.8
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 63.8
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 63.8
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 63.8
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 4.5e-22 107.8 94 63.8
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.5e-22 107.8 85 69.4
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 5.8e-22 107.5 94 63.8
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.8e-22 107.5 83 71.1
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 7.6e-22 107.1 94 64.9
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 67.0
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 3.8e-21 104.8 83 71.1
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 6.5e-21 104.0 97 68.0
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.4e-20 102.8 96 67.7
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.4e-20 102.8 83 73.5
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 4.2e-20 101.3 94 66.0
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 5.5e-20 100.9 85 68.2
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 7.1e-20 100.5 95 67.4
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 9.3e-20 100.1 94 63.8
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.2e-19 99.8 98 65.3
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.6e-19 99.4 94 61.7
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.6e-19 99.4 94 64.9
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 2.7e-19 98.6 118 55.1
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.9e-19 97.1 84 67.9
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.3e-18 96.3 83 68.7
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.8e-18 95.9 83 66.3
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.0e-18 95.1 85 65.9
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.9e-18 94.7 85 65.9
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 6.7e-18 94.0 94 60.6
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 8.7e-18 93.6 83 65.1
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.5e-17 92.8 94 62.8
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.5e-17 92.8 83 63.9
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.5e-17 92.0 89 65.2
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 2.5e-17 92.0 131 48.9
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 4.3e-17 91.3 83 63.9
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 4.3e-17 91.3 84 66.7
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 5.7e-17 90.9 84 66.7
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 9.7e-17 90.1 96 62.5
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 9.7e-17 90.1 83 62.7
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 9.7e-17 90.1 85 62.4
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.3e-16 89.7 76 68.4
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.3e-16 89.7 86 60.5
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 2.2e-16 89.0 51 88.2
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.1e-15 86.7 83 60.2
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.4e-15 86.3 95 60.0
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 4.1e-15 84.7 51 84.3
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 6.9e-15 84.0 94 56.4
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 3.4e-14 81.6 83 60.2
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 5.9e-14 80.9 80 60.0
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 5.9e-14 80.9 47 89.4
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 7.7e-14 80.5 89 58.4
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.0e-13 80.1 83 61.4
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.2e-13 79.0 92 55.4
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 5.0e-13 77.8 51 80.4
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 8.5e-13 77.0 95 52.6
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.1e-11 72.4 102 49.0
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 7.9e-11 70.5 95 50.5
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.8e-10 69.3 94 48.9
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 2.3e-10 68.9 88 51.1
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 5.1e-10 67.8 53 67.9
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.7e-10 67.4 106 45.3
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.8e-10 67.0 76 51.3
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 8.8e-10 67.0 76 51.3
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 8.8e-10 67.0 76 51.3
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.5e-09 66.2 89 44.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.5e-09 65.5 110 42.7
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 3.3e-09 65.1 105 46.7
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 3.3e-09 65.1 106 43.4
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 9.7e-09 63.5 89 44.9
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.3e-08 63.2 105 40.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.3e-08 63.2 105 44.8
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.3e-08 63.2 101 46.5
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.3e-08 63.2 101 46.5
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.7e-08 62.8 83 49.4
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.7e-08 62.8 94 44.7
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.7e-08 62.8 67 53.7
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.7e-08 62.8 94 45.7
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.7e-08 62.8 103 44.7
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.7e-08 62.8 103 42.7
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.8e-08 62.0 89 44.9
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.8e-08 62.0 89 44.9
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 2.8e-08 62.0 89 44.9
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 3.7e-08 61.6 82 47.6
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 4.8e-08 61.2 89 43.8
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 4.8e-08 61.2 89 43.8
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 4.8e-08 61.2 99 42.4
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 4.8e-08 61.2 103 42.7
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 6.3e-08 60.8 93 46.2
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.4e-07 59.7 100 46.0
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 1.4e-07 59.7 91 45.1
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.8e-07 59.3 103 41.7
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.8e-07 59.3 94 47.9
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 1.8e-07 59.3 45 75.6
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 3.1e-07 58.5 60 53.3
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 3.1e-07 58.5 77 45.5
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.1e-07 58.5 47 63.8
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.1e-07 58.5 47 63.8
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 3.1e-07 58.5 98 42.9
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 3.1e-07 58.5 66 48.5
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 3.1e-07 58.5 66 48.5
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.1e-07 58.5 94 43.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 4.1e-07 58.2 79 48.1
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 4.1e-07 58.2 94 44.7
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.1e-07 58.2 100 40.0
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 6.9e-07 57.4 100 43.0
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.9e-07 57.4 97 44.3
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.9e-07 57.4 100 45.0
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.1e-07 57.0 99 45.5
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.2e-06 56.6 92 41.3
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.2e-06 56.6 93 46.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.2e-06 56.6 94 40.4
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 1.5e-06 56.2 90 47.8
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.6e-06 55.5 98 42.9
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.6e-06 55.5 77 48.1
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 3.4e-06 55.1 81 44.4
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.4e-06 55.1 89 42.7
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 4.5e-06 54.7 95 42.1
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.5e-06 54.7 93 43.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 5.9e-06 54.3 81 43.2
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 7.7e-06 53.9 88 42.0
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 7.7e-06 53.9 79 45.6
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 7.7e-06 53.9 93 44.1
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 7.7e-06 53.9 94 43.6


User provided reference genes

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