Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv22443 Davidia involucrata HOM05D003507 ORTHO05D182987 1.2e-129 466.5 227 100.0
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 4.8e-30 135.6 134 62.7
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 5.0e-27 125.6 134 57.5
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 6.5e-27 125.2 134 57.5
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 6.5e-27 125.2 134 57.5
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 6.5e-27 125.2 134 57.5
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 1.1e-26 124.4 134 56.0
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 1.9e-26 123.6 134 56.7
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.9e-26 123.6 134 56.7
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 2.5e-26 123.2 134 56.7
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 2.5e-26 123.2 134 56.7
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 3.2e-26 122.9 134 56.7
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 4.2e-26 122.5 134 56.7
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.5e-26 122.1 136 53.7
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 5.5e-26 122.1 134 56.0
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 5.5e-26 122.1 134 56.0
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 7.2e-26 121.7 134 55.2
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 7.2e-26 121.7 134 57.5
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 7.2e-26 121.7 134 56.0
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 9.4e-26 121.3 134 55.2
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 9.4e-26 121.3 134 53.7
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.2e-25 120.9 134 55.2
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.2e-25 120.9 134 56.0
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 1.2e-25 120.9 134 56.7
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 1.2e-25 120.9 134 55.2
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 1.2e-25 120.9 134 54.5
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 1.2e-25 120.9 134 56.0
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.6e-25 120.6 134 55.2
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 1.6e-25 120.6 134 55.2
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.6e-25 120.6 134 55.2
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 2.1e-25 120.2 134 54.5
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 2.1e-25 120.2 134 56.0
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.1e-25 120.2 134 53.7
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 54.5
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 56.0
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 55.2
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 54.5
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 55.2
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 55.2
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 54.5
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 2.7e-25 119.8 134 54.5
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 3.6e-25 119.4 134 53.0
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 3.6e-25 119.4 111 62.2
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 3.6e-25 119.4 134 54.5
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 3.6e-25 119.4 134 54.5
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 4.7e-25 119.0 134 53.0
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 4.7e-25 119.0 134 54.5
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 4.7e-25 119.0 134 55.2
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 4.7e-25 119.0 134 53.7
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 4.7e-25 119.0 134 56.7
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 6.1e-25 118.6 134 55.2
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 6.1e-25 118.6 134 54.5
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 6.1e-25 118.6 134 54.5
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 6.1e-25 118.6 134 54.5
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 8.0e-25 118.2 136 52.2
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 8.0e-25 118.2 134 54.5
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 8.0e-25 118.2 134 55.2
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 8.0e-25 118.2 134 55.2
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 1.0e-24 117.9 134 54.5
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 1.0e-24 117.9 134 54.5
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 1.0e-24 117.9 134 54.5
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 1.0e-24 117.9 134 55.2
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 1.4e-24 117.5 134 53.0
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 1.4e-24 117.5 134 54.5
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.4e-24 117.5 137 53.3
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 1.8e-24 117.1 134 52.2
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.8e-24 117.1 134 53.7
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.8e-24 117.1 134 54.5
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 1.8e-24 117.1 134 53.0
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 1.8e-24 117.1 136 52.2
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 1.8e-24 117.1 134 53.7
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 2.3e-24 116.7 134 55.2
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 2.3e-24 116.7 134 53.0
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 2.3e-24 116.7 134 54.5
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 3.0e-24 116.3 136 53.7
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 3.0e-24 116.3 134 53.7
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 3.0e-24 116.3 135 54.1
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 4.0e-24 115.9 136 53.7
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 52.2
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 53.7
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 53.7
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 53.7
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 53.0
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 53.0
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 53.7
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 4.0e-24 115.9 134 53.7
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 6.8e-24 115.2 134 53.0
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 6.8e-24 115.2 134 53.7
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 6.8e-24 115.2 134 52.2
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 6.8e-24 115.2 134 53.7
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 8.8e-24 114.8 134 51.5
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 8.8e-24 114.8 135 51.9
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 8.8e-24 114.8 134 53.0
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.8e-24 114.8 134 53.0
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.8e-24 114.8 134 53.0
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.8e-24 114.8 134 53.0
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.2e-23 114.4 134 53.7
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 1.2e-23 114.4 134 52.2
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 1.2e-23 114.4 134 52.2
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 1.2e-23 114.4 134 51.5
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 1.5e-23 114.0 135 51.9
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.5e-23 114.0 134 51.5
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.5e-23 114.0 134 53.0
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.5e-23 114.0 134 50.7
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.5e-23 114.0 134 51.5
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 1.5e-23 114.0 134 51.5
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 2.0e-23 113.6 134 51.5
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 2.0e-23 113.6 134 51.5
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 2.0e-23 113.6 134 52.2
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 2.6e-23 113.2 134 52.2
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 2.6e-23 113.2 134 53.0
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 2.6e-23 113.2 134 52.2
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 3.4e-23 112.8 134 52.2
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 3.4e-23 112.8 135 51.1
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 3.4e-23 112.8 134 52.2
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.4e-23 112.8 134 51.5
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 3.4e-23 112.8 134 51.5
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 3.4e-23 112.8 134 52.2
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 4.4e-23 112.5 134 51.5
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 4.4e-23 112.5 134 51.5
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 5.7e-23 112.1 134 51.5
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 7.5e-23 111.7 134 50.7
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 7.5e-23 111.7 134 51.5
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 7.5e-23 111.7 134 50.7
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 9.8e-23 111.3 134 50.7
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 9.8e-23 111.3 166 45.8
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 1.3e-22 110.9 136 51.5
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 1.3e-22 110.9 136 51.5
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 1.3e-22 110.9 134 50.7
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 1.3e-22 110.9 134 51.5
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 1.7e-22 110.5 134 51.5
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 2.8e-22 109.8 134 50.7
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 2.8e-22 109.8 134 52.2
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 3.7e-22 109.4 105 57.1
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 3.7e-22 109.4 134 50.7
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 4.9e-22 109.0 134 50.7
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 4.9e-22 109.0 134 50.7
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 7.0e-21 105.1 134 50.7
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 7.0e-21 105.1 134 49.3
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 1.2e-20 104.4 74 74.3
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 2.0e-20 103.6 74 74.3
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 5.9e-20 102.1 136 44.9
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 5.9e-20 102.1 152 43.4
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 1.3e-19 100.9 128 51.6
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 6.6e-19 98.6 86 64.0
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 3.3e-18 96.3 74 67.6
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.1e-17 93.6 134 43.3
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.7e-17 92.4 69 72.5
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 4.7e-17 92.4 135 43.7
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 6.1e-17 92.0 134 43.3
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 8.0e-17 91.7 135 45.9
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 8.0e-17 91.7 65 76.9
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 4.0e-16 89.4 135 42.2
CDE09G1104 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 2.0e-15 87.0 74 62.2
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 2.6e-15 86.7 135 42.2
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.7e-14 84.0 129 41.9
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.8e-13 80.5 129 41.1
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 5.9e-12 75.5 135 38.5
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 1.0e-11 74.7 117 41.9
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 3.0e-11 73.2 87 47.1
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.5e-10 70.9 78 57.7
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 6.2e-09 65.5 106 42.5
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 4.0e-08 62.8 89 42.7
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 3.7e-06 56.2 131 32.8


User provided reference genes

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