Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv21814 Davidia involucrata HOM05D002454 ORTHO05D002581 2.3e-28 128.3 67 100.0
CSS0016666 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 5.3e-17 90.5 66 74.2
Peaxi162Scf00284g00019 Petunia axillaris HOM05D002454 ORTHO05D002581 1.2e-16 89.4 66 72.7
Peaxi162Scf00284g00020 Petunia axillaris HOM05D002454 ORTHO05D002581 1.5e-16 89.0 66 71.2
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.0e-16 88.6 66 71.2
MD07G1230200 Malus domestica HOM05D002454 ORTHO05D002581 2.0e-16 88.6 66 71.2
Solyc06g050870.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 2.0e-16 88.6 66 69.7
Sopen06g016550 Solanum pennellii HOM05D002454 ORTHO05D002581 2.0e-16 88.6 66 69.7
Dinv10555 Davidia involucrata HOM05D002454 ORTHO05D002581 3.4e-16 87.8 66 72.7
PGR142G4142 Punica granatum HOM05D002454 ORTHO05D002581 3.4e-16 87.8 55 76.4
Hma1.2p1_0322F.1_g124760 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 7.6e-16 86.7 66 71.2
Ciclev10033224m.g Citrus clementina HOM05D002454 ORTHO05D002581 1.3e-15 85.9 57 73.7
Eucgr.G03116 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.3e-15 85.9 55 78.2
MD01G1162000 Malus domestica HOM05D002454 ORTHO05D002581 1.3e-15 85.9 66 68.2
Nitab4.5_0000263g0170 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.3e-15 85.9 66 68.2
MSTRG.8905 Avicennia marina HOM05D002454 ORTHO05D002581 1.7e-15 85.5 57 71.9
GSVIVG01032718001 Vitis vinifera HOM05D002454 ORTHO05D002581 2.2e-15 85.1 56 78.6
Haze_17326 Corylus avellana HOM05D002454 ORTHO05D002581 2.9e-15 84.7 55 76.4
Thecc.10G173500 Theobroma cacao HOM05D002454 ORTHO05D002581 2.9e-15 84.7 56 78.6
CsaV3_6G002150 Cucumis sativus L. HOM05D002454 ORTHO05D002581 3.8e-15 84.3 66 66.7
Rhsim09G0183400 Rhododendron simsii HOM05D002454 ORTHO05D002581 4.9e-15 84.0 66 69.7
Atru.chr12.139 Acer truncatum HOM05D002454 ORTHO05D002581 6.4e-15 83.6 55 74.5
TAR362G0424 Trochodendron aralioides HOM05D002454 ORTHO05D002581 6.4e-15 83.6 66 68.2
MELO3C019992.2 Cucumis melo HOM05D002454 ORTHO05D002581 8.4e-15 83.2 66 65.2
Duzib114G0242 Durio zibethinus HOM05D002454 ORTHO05D002581 8.4e-15 83.2 56 76.8
Sed0004084 Sechium edule HOM05D002454 ORTHO05D002581 8.4e-15 83.2 66 65.2
ClCG11G005830 Citrullus lanatus HOM05D002454 ORTHO05D002581 1.1e-14 82.8 66 63.6
Potri.019G056000 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.1e-14 82.8 67 70.1
CiPaw.01G303900 Carya illinoinensis HOM05D002454 ORTHO05D002581 1.4e-14 82.4 66 66.7
Oeu024603.1 Olea europaea HOM05D002454 ORTHO05D002581 1.4e-14 82.4 66 63.6
Manes.10G006200 Manihot esculenta HOM05D002454 ORTHO05D002581 1.9e-14 82.0 55 70.9
Cc02_g05670 Coffea canephora HOM05D002454 ORTHO05D002581 2.4e-14 81.6 56 75.0
Nitab4.5_0000928g0010 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.4e-14 81.6 66 65.2
Duzib106G0273 Durio zibethinus HOM05D002454 ORTHO05D002581 5.5e-14 80.5 56 76.8
Migut.F00582 Erythranthe guttata HOM05D002454 ORTHO05D002581 5.5e-14 80.5 66 62.1
Nn2g11081 Nelumbo nucifera HOM05D002454 ORTHO05D002581 5.5e-14 80.5 55 72.7
Gohir.A10G181600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 7.1e-14 80.1 56 75.0
arahy.Tifrunner.gnm1.ann1.I20Q6X Arachis hypogaea HOM05D002454 ORTHO05D002581 1.6e-13 79.0 56 71.4
SGA_v2.0_scaffold60G20930 Striga asiatica HOM05D002454 ORTHO05D002581 1.6e-13 79.0 55 69.1
Prupe.2G260100 Prunus persica HOM05D002454 ORTHO05D002581 2.1e-13 78.6 57 66.7
QL12p021814 Quercus lobata HOM05D002454 ORTHO05D002581 2.7e-13 78.2 56 73.2
Sc10g0002820 Simmondsia chinensis HOM05D002454 ORTHO05D002581 2.7e-13 78.2 56 71.4
arahy.Tifrunner.gnm1.ann1.B62TBJ Arachis hypogaea HOM05D002454 ORTHO05D002581 3.5e-13 77.8 56 69.6
Gohir.D10G188601 Gossypium hirsutum HOM05D002454 ORTHO05D002581 3.5e-13 77.8 56 73.2
Gorai.011G211500 Gossypium raimondii HOM05D002454 ORTHO05D002581 3.5e-13 77.8 56 73.2
Manes.07G139000 Manihot esculenta HOM05D002454 ORTHO05D002581 3.5e-13 77.8 66 63.6
Lj6g0012676 Lotus japonicus HOM05D002454 ORTHO05D002581 4.6e-13 77.4 56 69.6
MBI15_g26252_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 4.6e-13 77.4 55 67.3
Nn2g13310 Nelumbo nucifera HOM05D002454 ORTHO05D002581 4.6e-13 77.4 55 67.3
TWI09G0147 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 4.6e-13 77.4 67 65.7
CDE06G0495 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 6.0e-13 77.0 55 67.3
Cpa.g.sc19.96 Carica papaya HOM05D002454 ORTHO05D002581 7.9e-13 76.6 55 67.3
COL.COLO4_38189 Corchorus olitorius HOM05D002454 ORTHO05D002581 7.9e-13 76.6 55 69.1
Gohir.D05G282000 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.3e-12 75.9 58 67.2
Gohir.D10G188700 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.3e-12 75.9 48 72.9
Gorai.011G211700 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.3e-12 75.9 48 72.9
Medtr3g072170 Medicago truncatula HOM05D002454 ORTHO05D002581 1.3e-12 75.9 56 69.6
Nn2g11080 Nelumbo nucifera HOM05D002454 ORTHO05D002581 1.8e-12 75.5 56 69.6
Ah.16g104110 Amaranthus hybridus HOM05D002454 ORTHO05D002581 2.3e-12 75.1 67 62.7
Ca_15180_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 2.3e-12 75.1 56 69.6
Aqoxy4G02150 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 3.0e-12 74.7 56 69.6
Gohir.A05G280200 Gossypium hirsutum HOM05D002454 ORTHO05D002581 3.0e-12 74.7 58 65.5
HanXRQChr14g0460321 Helianthus annuus HOM05D002454 ORTHO05D002581 3.0e-12 74.7 56 67.9
QL08p064313 Quercus lobata HOM05D002454 ORTHO05D002581 3.0e-12 74.7 67 62.7
ECA238G3914 Erigeron canadensis HOM05D002454 ORTHO05D002581 3.9e-12 74.3 58 62.1
CDE07G0062 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 5.1e-12 73.9 57 61.4
FvH4_7g25530 Fragaria vesca HOM05D002454 ORTHO05D002581 6.7e-12 73.6 55 65.5
FAN01G2207 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.7e-12 73.6 55 65.5
FAN03G1407 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.7e-12 73.6 55 65.5
FAN06G0980 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.7e-12 73.6 55 65.5
FAN10G2383 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.7e-12 73.6 55 65.5
Lalb_Chr08g0231331 Lupinus albus HOM05D002454 ORTHO05D002581 6.7e-12 73.6 56 64.3
Glyma.02G259700 Glycine max HOM05D002454 ORTHO05D002581 1.1e-11 72.8 56 66.1
Glyma.11G235000 Glycine max HOM05D002454 ORTHO05D002581 1.1e-11 72.8 56 67.9
Phvul.001G248400 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 1.1e-11 72.8 56 66.1
TPR.G31628 Trifolium pratense HOM05D002454 ORTHO05D002581 1.1e-11 72.8 56 66.1
ATR1127G079 Amborella trichopoda HOM05D002454 ORTHO05D002581 1.5e-11 72.4 53 64.2
Lsat_1_v5_gn_2_126041 Lactuca sativa HOM05D002454 ORTHO05D002581 1.5e-11 72.4 56 64.3
VMungo1383G1136 Vigna mungo HOM05D002454 ORTHO05D002581 1.5e-11 72.4 56 67.9
HPP92_019066 Vanilla planifolia HOM05D002454 ORTHO05D002581 1.9e-11 72.0 64 59.4
RcHm_v2.0_Chr1g0371531 Rosa chinensis HOM05D002454 ORTHO05D002581 3.3e-11 71.2 55 65.5
EL10Ac2g04286 Beta vulgaris HOM05D002454 ORTHO05D002581 5.6e-11 70.5 67 59.7
Psat2g024640 Pisum sativum HOM05D002454 ORTHO05D002581 5.6e-11 70.5 67 56.7
Glyma.18G022000 Glycine max HOM05D002454 ORTHO05D002581 7.4e-11 70.1 56 64.3
QL05p010056 Quercus lobata HOM05D002454 ORTHO05D002581 7.4e-11 70.1 67 59.7
Ca_06019_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 1.6e-10 68.9 56 58.9
DCAR_028543 Daucus carota HOM05D002454 ORTHO05D002581 1.6e-10 68.9 56 60.7
Phvul.008G218800 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 2.1e-10 68.6 56 66.1
Psat5g131400 Pisum sativum HOM05D002454 ORTHO05D002581 2.1e-10 68.6 56 64.3
LjContig00357g0002802 Lotus japonicus HOM05D002454 ORTHO05D002581 2.8e-10 68.2 56 64.3
Lalb_Chr04g0250311 Lupinus albus HOM05D002454 ORTHO05D002581 3.7e-10 67.8 56 62.5
Sabra19G0071600 Salix brachista HOM05D002454 ORTHO05D002581 4.8e-10 67.4 63 61.9
Hund13508 Selenicereus undatus HOM05D002454 ORTHO05D002581 8.2e-10 66.6 59 59.3
Lsat_1_v5_gn_7_65801 Lactuca sativa HOM05D002454 ORTHO05D002581 1.1e-09 66.2 52 63.5
Zm00001eb195180 Zea mays HOM05D002454 ORTHO05D002581 4.0e-09 64.3 54 59.3
arahy.Tifrunner.gnm1.ann1.P3THXV Arachis hypogaea HOM05D002454 ORTHO05D002581 5.3e-09 63.9 50 64.0
arahy.Tifrunner.gnm1.ann1.UN2NP6 Arachis hypogaea HOM05D002454 ORTHO05D002581 5.3e-09 63.9 50 64.0
Os12g0111600 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 3.4e-08 61.2 53 58.5
Zm00001eb262690 Zea mays HOM05D002454 ORTHO05D002581 7.6e-08 60.1 54 53.7
SEGI_27459 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 1.0e-07 59.7 53 52.8
SEGI_41397 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 1.3e-07 59.3 53 52.8
SEGI_13531 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 2.2e-07 58.5 53 52.8
SEGI_14580 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 2.9e-07 58.2 53 50.9
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 3.8e-07 57.8 55 47.3
Cfa001235 Carpinus fangiana HOM05D002454 ORTHO05D002581 6.5e-07 57.0 40 70.0
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 6.5e-07 57.0 55 47.3
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 8.4e-07 56.6 55 49.1
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 8.4e-07 56.6 48 52.1
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 1.1e-06 56.2 55 45.5
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 1.1e-06 56.2 55 45.5
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 1.1e-06 56.2 55 45.5
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 1.4e-06 55.8 54 48.1
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.4e-06 55.8 54 44.4
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.4e-06 55.8 54 44.4
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.4e-06 55.8 54 44.4
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.4e-06 55.8 55 47.3
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 1.4e-06 55.8 55 47.3
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 1.9e-06 55.5 55 43.6
Pp3c23_8640 Physcomitrium patens HOM05D002454 ORTHO05D002581 2.5e-06 55.1 55 45.5
PGSC0003DMG400027976 Solanum tuberosum HOM05D002454 ORTHO05D002581 2.5e-06 55.1 50 60.0
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 3.2e-06 54.7 55 45.5
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 3.2e-06 54.7 48 47.9
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 3.2e-06 54.7 55 43.6
Zm00001eb276270 Zea mays HOM05D002454 ORTHO05D002581 3.2e-06 54.7 54 48.1
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 4.2e-06 54.3 48 50.0
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 4.2e-06 54.3 54 44.4
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 4.2e-06 54.3 55 43.6
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 5.5e-06 53.9 54 46.3
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 5.5e-06 53.9 55 45.5
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 5.5e-06 53.9 55 40.0
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 5.5e-06 53.9 55 47.3
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 5.5e-06 53.9 55 43.6
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 7.1e-06 53.5 55 45.5
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 7.1e-06 53.5 55 41.8
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 7.1e-06 53.5 55 43.6
Gorai.009G295400 Gossypium raimondii HOM05D002454 ORTHO05D002581 7.1e-06 53.5 43 65.1
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 7.1e-06 53.5 54 46.3
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 7.1e-06 53.5 55 45.5
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 7.1e-06 53.5 55 45.5
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 7.1e-06 53.5 55 41.8
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 9.3e-06 53.1 52 44.2
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 9.3e-06 53.1 55 43.6
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 9.3e-06 53.1 48 45.8
MBI13_g29640_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 9.3e-06 53.1 39 69.2
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 9.3e-06 53.1 55 43.6
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 9.3e-06 53.1 54 44.4
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 9.3e-06 53.1 54 44.4
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 9.3e-06 53.1 55 43.6
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 9.3e-06 53.1 54 44.4
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 9.3e-06 53.1 55 43.6
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 9.3e-06 53.1 54 44.4
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 9.3e-06 53.1 54 44.4


User provided reference genes

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