Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17538 Davidia involucrata HOM05D002468 ORTHO05D009172 2.9e-125 451.8 219 100.0
Actinidia30582 Actinidia chinensis HOM05D002468 ORTHO05D009172 1.4e-74 283.5 204 72.5
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 1.3e-72 276.9 206 73.3
Rhsim12G0017000 Rhododendron simsii HOM05D002468 ORTHO05D009172 1.8e-69 266.5 205 67.3
TAR622G1298 Trochodendron aralioides HOM05D002468 ORTHO05D009172 1.8e-69 266.5 208 68.3
vmacro01016 Vaccinium macrocarpon HOM05D002468 ORTHO05D009172 5.1e-69 265.0 208 67.8
GSVIVG01001099001 Vitis vinifera HOM05D002468 ORTHO05D009172 1.3e-67 260.4 213 65.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.1e-67 259.6 158 80.4
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.9e-66 254.6 185 72.4
Atru.chr12.1429 Acer truncatum HOM05D002468 ORTHO05D009172 9.0e-66 254.2 213 64.3
Cfa009456 Carpinus fangiana HOM05D002468 ORTHO05D009172 2.6e-65 252.7 211 65.4
Nn4g22124 Nelumbo nucifera HOM05D002468 ORTHO05D009172 5.8e-65 251.5 205 64.4
TWI75G1838 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 5.8e-65 251.5 206 66.5
Ciclev10005642m.g Citrus clementina HOM05D002468 ORTHO05D009172 1.3e-64 250.4 217 63.6
Manes.08G100500 Manihot esculenta HOM05D002468 ORTHO05D009172 1.7e-64 250.0 209 65.1
TWI36G1656 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 2.9e-64 249.2 206 66.5
QL03p049029 Quercus lobata HOM05D002468 ORTHO05D009172 6.5e-64 248.1 178 71.3
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 2.7e-62 242.7 168 70.8
CiPaw.05G100600 Carya illinoinensis HOM05D002468 ORTHO05D009172 3.5e-62 242.3 205 62.9
CAN.G624.2 Capsicum annuum HOM05D002468 ORTHO05D009172 1.3e-61 240.4 201 63.7
Prupe.1G214100 Prunus persica HOM05D002468 ORTHO05D009172 1.3e-61 240.4 209 64.1
Sopen11g017130 Solanum pennellii HOM05D002468 ORTHO05D009172 1.3e-61 240.4 156 74.4
Solyc11g033284.1 Solanum lycopersicum HOM05D002468 ORTHO05D009172 2.3e-61 239.6 156 74.4
Eucgr.G01979 Eucalyptus grandis HOM05D002468 ORTHO05D009172 3.0e-61 239.2 143 78.3
ClCG07G011930 Citrullus lanatus HOM05D002468 ORTHO05D009172 5.1e-61 238.4 208 62.5
Ca_07032_v3 Cicer arietinum L. HOM05D002468 ORTHO05D009172 6.7e-61 238.0 184 67.9
Nitab4.5_0002569g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 1.1e-60 237.3 209 63.2
Thecc.02G191300 Theobroma cacao HOM05D002468 ORTHO05D009172 1.1e-60 237.3 147 78.2
RcHm_v2.0_Chr4g0428781 Rosa chinensis HOM05D002468 ORTHO05D009172 1.5e-60 236.9 208 61.1
PGSC0003DMG401028027 Solanum tuberosum HOM05D002468 ORTHO05D009172 1.9e-60 236.5 156 73.1
MSTRG.8059 Avicennia marina HOM05D002468 ORTHO05D009172 2.5e-60 236.1 203 62.1
MELO3C017816.2 Cucumis melo HOM05D002468 ORTHO05D009172 2.5e-60 236.1 207 60.9
Peaxi162Scf00842g00418 Petunia axillaris HOM05D002468 ORTHO05D009172 2.5e-60 236.1 151 76.8
Sed0016874 Sechium edule HOM05D002468 ORTHO05D009172 2.5e-60 236.1 206 63.1
MD16G1141800 Malus domestica HOM05D002468 ORTHO05D009172 3.3e-60 235.7 155 73.5
CsaV3_4G002230 Cucumis sativus L. HOM05D002468 ORTHO05D009172 7.4e-60 234.6 202 60.9
Nitab4.5_0004349g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 7.4e-60 234.6 150 76.7
Lalb_Chr04g0257311 Lupinus albus HOM05D002468 ORTHO05D009172 9.6e-60 234.2 204 60.8
Sabra01G0047500 Salix brachista HOM05D002468 ORTHO05D009172 9.6e-60 234.2 149 77.9
Potri.001G068300 Populus trichocarpa HOM05D002468 ORTHO05D009172 1.6e-59 233.4 151 75.5
Migut.K01048 Erythranthe guttata HOM05D002468 ORTHO05D009172 2.8e-59 232.6 205 60.5
Aqoxy5G03072 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 3.7e-59 232.3 217 57.6
Sc11g0000070 Simmondsia chinensis HOM05D002468 ORTHO05D009172 3.7e-59 232.3 187 64.7
Phvul.008G009400 Phaseolus vulgaris HOM05D002468 ORTHO05D009172 6.3e-59 231.5 173 66.5
Cc11_g14950 Coffea canephora HOM05D002468 ORTHO05D009172 1.1e-58 230.7 215 58.6
Gohir.D04G141000 Gossypium hirsutum HOM05D002468 ORTHO05D009172 1.4e-58 230.3 147 75.5
Gorai.012G126000 Gossypium raimondii HOM05D002468 ORTHO05D009172 2.4e-58 229.6 147 75.5
Lj1g0015804 Lotus japonicus HOM05D002468 ORTHO05D009172 2.4e-58 229.6 199 61.3
CANSAT80G1997 Cannabis sativa HOM05D002468 ORTHO05D009172 3.1e-58 229.2 145 74.5
TPR.G9727 Trifolium pratense HOM05D002468 ORTHO05D009172 4.1e-58 228.8 199 60.8
Aqoxy5G03073 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 5.3e-58 228.4 212 56.6
Glyma.18G292600 Glycine max HOM05D002468 ORTHO05D009172 5.3e-58 228.4 123 87.0
FAN07G2873 Fragaria x ananassa HOM05D002468 ORTHO05D009172 6.9e-58 228.0 202 61.4
PGR119G1456 Punica granatum HOM05D002468 ORTHO05D009172 9.0e-58 227.6 198 63.1
CARHR200020 Cardamine hirsuta HOM05D002468 ORTHO05D009172 1.5e-57 226.9 209 59.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.6e-57 226.1 206 60.2
Lsat_1_v5_gn_3_32621 Lactuca sativa HOM05D002468 ORTHO05D009172 2.6e-57 226.1 202 59.4
VMungo1383G2635 Vigna mungo HOM05D002468 ORTHO05D009172 7.6e-57 224.6 202 59.4
FvH4_4g22550 Fragaria vesca HOM05D002468 ORTHO05D009172 1.0e-56 224.2 203 60.1
THA.LOC104825606 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 1.0e-56 224.2 208 60.1
Aa31LG3G14280 Aethionema arabicum HOM05D002468 ORTHO05D009172 1.3e-56 223.8 219 57.5
Medtr7g006570 Medicago truncatula HOM05D002468 ORTHO05D009172 1.3e-56 223.8 165 66.7
Sp6g30610 Schrenkiella parvula HOM05D002468 ORTHO05D009172 1.3e-56 223.8 207 58.5
Zm00001eb040970 Zea mays HOM05D002468 ORTHO05D009172 1.7e-56 223.4 161 67.7
Carub.0006s1157 Capsella rubella HOM05D002468 ORTHO05D009172 2.2e-56 223.0 209 60.3
A02p01900 Brassica napus HOM05D002468 ORTHO05D009172 2.9e-56 222.6 206 61.2
BraA02t05163Z Brassica rapa HOM05D002468 ORTHO05D009172 2.9e-56 222.6 206 61.2
DCAR_026442 Daucus carota HOM05D002468 ORTHO05D009172 6.5e-56 221.5 143 74.8
ATR0582G095 Amborella trichopoda HOM05D002468 ORTHO05D009172 8.5e-56 221.1 135 77.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.9e-55 219.9 179 62.0
BcaNung01157 Brassica carinata HOM05D002468 ORTHO05D009172 4.2e-55 218.8 145 74.5
AT5G13410 Arabidopsis thaliana HOM05D002468 ORTHO05D009172 7.2e-55 218.0 209 58.9
CDE06G1087 Ceratophyllum demersum HOM05D002468 ORTHO05D009172 7.2e-55 218.0 146 70.5
AL6G24030 Arabidopsis lyrata HOM05D002468 ORTHO05D009172 9.3e-55 217.6 212 57.5
Thhalv10014743m.g Eutrema salsugineum HOM05D002468 ORTHO05D009172 2.1e-54 216.5 139 75.5
PSO017G2800 Papaver somniferum HOM05D002468 ORTHO05D009172 2.7e-54 216.1 142 70.4
BcaNung01882 Brassica carinata HOM05D002468 ORTHO05D009172 4.6e-54 215.3 206 58.3
Os07g0133700 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D009172 1.0e-53 214.2 135 75.6
HPP92_024421 Vanilla planifolia HOM05D002468 ORTHO05D009172 1.0e-53 214.2 144 72.2
EL10Ac7g17009 Beta vulgaris HOM05D002468 ORTHO05D009172 1.8e-53 213.4 119 83.2
MBI11_g34559_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D009172 3.9e-53 212.2 189 59.8
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 8.7e-53 211.1 176 65.3
Oeu010258.1 Olea europaea HOM05D002468 ORTHO05D009172 2.5e-52 209.5 232 53.9
Lj6A840G36 Lonicera japonica HOM05D002468 ORTHO05D009172 2.8e-51 206.1 110 85.5
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 1.1e-50 204.1 127 71.7
C02p06120 Brassica napus HOM05D002468 ORTHO05D009172 1.4e-50 203.8 147 70.1
BolC2t06553H Brassica oleracea HOM05D002468 ORTHO05D009172 1.4e-50 203.8 147 70.1
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis HOM05D002468 ORTHO05D009172 1.5e-49 200.3 157 61.8
Pp3c16_12110 Physcomitrium patens HOM05D002468 ORTHO05D009172 1.7e-48 196.8 216 50.5
SGA_v2.0_scaffold258G45770 Striga asiatica HOM05D002468 ORTHO05D009172 1.1e-47 194.1 201 55.7
Psat3g206960 Pisum sativum HOM05D002468 ORTHO05D009172 7.2e-47 191.4 174 59.8
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 2.1e-46 189.9 118 71.2
Ah.06g186920 Amaranthus hybridus HOM05D002468 ORTHO05D009172 6.1e-46 188.3 94 90.4
Glyma.02G090600 Glycine max HOM05D002468 ORTHO05D009172 6.1e-46 188.3 132 68.9
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 7.9e-46 188.0 144 60.4
Cpa.g.sc38.65 Carica papaya HOM05D002468 ORTHO05D009172 3.0e-45 186.0 97 88.7
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 7.4e-44 181.4 110 72.7
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 1.7e-43 180.3 124 64.5
Cre12.g534700 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 6.1e-38 161.8 148 55.4
Hma1.2p1_1436F.1_g283220 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 1.0e-37 161.0 146 64.4
Gohir.A04G101800 Gossypium hirsutum HOM05D002468 ORTHO05D009172 1.8e-37 160.2 147 57.8
arahy.Tifrunner.gnm1.ann1.PEQR69 Arachis hypogaea HOM05D002468 ORTHO05D009172 5.3e-34 148.7 146 55.5
arahy.Tifrunner.gnm1.ann1.QPD63Z Arachis hypogaea HOM05D002468 ORTHO05D009172 5.3e-34 148.7 146 55.5
PRCOL_00000716 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 1.8e-29 133.7 111 58.6
THA.LOC104816706 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 7.0e-26 121.7 67 82.1
MCO06G148 Micromonas commoda HOM05D002468 ORTHO05D009172 4.8e-19 99.0 178 38.8
QL02p011811 Quercus lobata HOM05D002468 ORTHO05D009172 5.9e-17 92.0 47 87.2
MD13G1131500 Malus domestica HOM05D002468 ORTHO05D009172 6.5e-16 88.6 56 71.4
MCO11G048 Micromonas commoda HOM05D002468 ORTHO05D009172 7.2e-15 85.1 89 46.1
PRCOL_00003949 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 2.6e-12 76.6 91 45.1
Cre02.g095122 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 4.5e-09 65.9 96 37.5
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 1.9e-07 60.5 180 30.0
Gohir.D02G110500 Gossypium hirsutum HOM05D005939 ORTHO05D007412 2.5e-07 60.1 163 31.3
Gorai.005G125400 Gossypium raimondii HOM05D005939 ORTHO05D007412 2.5e-07 60.1 163 31.3
AagrBONN_evm.TU.Sc2ySwM_228.5810 Anthoceros agrestis HOM05D005939 ORTHO05D007412 4.3e-07 59.3 146 32.2
Mapoly0034s0118 Marchantia polymorpha HOM05D005939 ORTHO05D007412 4.3e-07 59.3 156 32.1
MSTRG.22020 Avicennia marina HOM05D005939 ORTHO05D007412 5.6e-07 58.9 158 31.6
HanXRQChr14g0433821 Helianthus annuus HOM05D005939 ORTHO05D007412 5.6e-07 58.9 131 29.8
Manes.04G037900 Manihot esculenta HOM05D005939 ORTHO05D007412 5.6e-07 58.9 170 29.4
vmacro00653 Vaccinium macrocarpon HOM05D005939 ORTHO05D007412 7.3e-07 58.5 165 30.9
ECA238G2261 Erigeron canadensis HOM05D005939 ORTHO05D007412 9.5e-07 58.2 86 34.9
Migut.N03077 Erythranthe guttata HOM05D005939 ORTHO05D007412 9.5e-07 58.2 141 31.9
Lsat_1_v5_gn_2_34361 Lactuca sativa HOM05D005939 ORTHO05D007412 1.2e-06 57.8 151 29.1
Thecc.04G170700 Theobroma cacao HOM05D005939 ORTHO05D007412 1.2e-06 57.8 135 33.3
arahy.Tifrunner.gnm1.ann1.2A1NT4 Arachis hypogaea HOM05D005939 ORTHO05D007412 1.6e-06 57.4 157 30.6
Cc06_g20200 Coffea canephora HOM05D005939 ORTHO05D007412 1.6e-06 57.4 188 28.7
Gohir.A02G092400 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.6e-06 57.4 163 30.7
Lalb_Chr03g0026021 Lupinus albus HOM05D005939 ORTHO05D007412 1.6e-06 57.4 157 31.2
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 1.6e-06 57.4 89 37.1
Aqoxy2G04151 Aquilegia oxysepala HOM05D005939 ORTHO05D007412 2.1e-06 57.0 90 37.8
Ca_20809_v3 Cicer arietinum L. HOM05D005939 ORTHO05D007412 2.1e-06 57.0 146 32.2
Os08g0541400 Oryza sativa ssp. japonica HOM05D005939 ORTHO05D007412 2.1e-06 57.0 136 33.1
Psat7g208400 Pisum sativum HOM05D005939 ORTHO05D007412 2.1e-06 57.0 146 31.5
Aa31LG1G25290 Aethionema arabicum HOM05D005939 ORTHO05D007412 2.8e-06 56.6 151 30.5
GSVIVG01038097001 Vitis vinifera HOM05D005939 ORTHO05D007412 2.8e-06 56.6 154 32.5
CAN.G1263.30 Capsicum annuum HOM05D005939 ORTHO05D007412 3.6e-06 56.2 86 36.0
Potri.007G134600 Populus trichocarpa HOM05D005939 ORTHO05D007412 3.6e-06 56.2 111 34.2
Prupe.1G203000 Prunus persica HOM05D005939 ORTHO05D007412 3.6e-06 56.2 153 30.7
ATR0743G264 Amborella trichopoda HOM05D005939 ORTHO05D007412 4.7e-06 55.8 89 38.2
MELO3C017776.2 Cucumis melo HOM05D005939 ORTHO05D007412 4.7e-06 55.8 103 33.0
Solyc04g015040.3 Solanum lycopersicum HOM05D005939 ORTHO05D007412 4.7e-06 55.8 86 36.0
Sopen04g007060 Solanum pennellii HOM05D005939 ORTHO05D007412 4.7e-06 55.8 86 36.0
EL10Ac1g00779 Beta vulgaris HOM05D007218 ORTHO05D008812 6.1e-06 55.5 111 29.7
Cpa.g.sc9.337 Carica papaya HOM05D005939 ORTHO05D007412 6.1e-06 55.5 89 37.1
Duzib212G0518 Durio zibethinus HOM05D005939 ORTHO05D007412 6.1e-06 55.5 89 38.2
Lj3g0005991 Lotus japonicus HOM05D005939 ORTHO05D007412 6.1e-06 55.5 154 28.6
Phvul.011G051700 Phaseolus vulgaris HOM05D005939 ORTHO05D007412 6.1e-06 55.5 144 31.9
PGSC0003DMG400015011 Solanum tuberosum HOM05D005939 ORTHO05D007412 6.1e-06 55.5 86 34.9
THA.LOC104803948 Tarenaya hassleriana HOM05D005939 ORTHO05D007412 6.1e-06 55.5 89 37.1
TAR365G0833 Trochodendron aralioides HOM05D005939 ORTHO05D007412 6.1e-06 55.5 86 37.2
Atru.chr4.1353 Acer truncatum HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 36.0
EL10Ac3g06033 Beta vulgaris HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 36.0
CiPaw.01G172900 Carya illinoinensis HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
CDE02G1670 Ceratophyllum demersum HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
Duzib133G0872 Durio zibethinus HOM05D007218 ORTHO05D008812 8.0e-06 55.1 93 33.3
Eucgr.C02176 Eucalyptus grandis HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
FvH4_4g10650 Fragaria vesca HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
FAN07G1487 Fragaria x ananassa HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
FAN12G1526 Fragaria x ananassa HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
FAN12G3158 Fragaria x ananassa HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
Glyma.11G124900 Glycine max HOM05D005939 ORTHO05D007412 8.0e-06 55.1 144 31.2
RcHm_v2.0_Chr4g0406301 Rosa chinensis HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1
SGA_v2.0_scaffold19G08830 Striga asiatica HOM05D005939 ORTHO05D007412 8.0e-06 55.1 89 37.1


User provided reference genes

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