Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.3e-103 379.8 202 100.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 2.0e-75 286.2 196 79.1
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.2e-74 282.7 203 76.4
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.8e-73 279.6 203 75.9
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.6e-72 276.6 185 77.8
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 3.5e-72 275.4 199 72.9
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.9e-72 274.6 199 75.4
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 7.8e-72 274.2 202 71.8
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.7e-71 273.1 206 71.8
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.3e-71 272.7 192 73.4
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 3.9e-71 271.9 196 72.4
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 3.9e-71 271.9 200 72.5
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.0e-71 271.6 201 72.6
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.5e-70 270.0 185 76.8
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-70 269.6 207 71.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.5e-70 269.2 182 76.4
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.5e-70 269.2 175 78.9
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.3e-70 268.9 189 74.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.2e-69 266.9 199 72.9
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.1e-69 264.6 202 70.3
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 8.0e-69 264.2 189 73.0
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.0e-68 263.8 195 71.8
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.8e-68 263.1 202 71.8
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.8e-68 263.1 193 71.0
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.3e-68 262.7 186 72.6
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 5.2e-68 261.5 182 74.7
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 5.2e-68 261.5 176 77.8
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.5e-67 260.0 211 65.9
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.4e-67 258.8 202 70.3
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.4e-67 258.8 225 65.8
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.5e-67 257.7 200 68.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 9.8e-67 257.3 195 70.3
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.3e-66 256.9 197 66.5
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.7e-66 256.5 185 70.8
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.7e-66 256.5 184 70.7
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.7e-66 256.5 179 76.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.2e-66 256.1 192 69.3
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 2.9e-66 255.8 192 69.8
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 4.9e-66 255.0 184 72.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 4.9e-66 255.0 193 71.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 4.9e-66 255.0 208 66.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 4.9e-66 255.0 176 75.0
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.1e-65 253.8 179 74.9
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.4e-65 253.4 205 67.8
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.4e-65 252.7 200 68.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.2e-65 252.3 200 67.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.4e-65 251.5 179 73.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 9.2e-65 250.8 166 78.9
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 9.2e-65 250.8 196 67.9
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 9.2e-65 250.8 179 73.7
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-64 250.0 209 65.6
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-64 250.0 209 65.6
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.6e-64 250.0 205 66.3
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 2.0e-64 249.6 200 67.0
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.0e-64 249.6 197 67.5
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.5e-64 248.8 184 69.0
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 3.5e-64 248.8 199 64.8
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 6.0e-64 248.1 180 73.9
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 6.0e-64 248.1 186 70.4
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 6.0e-64 248.1 194 69.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 7.8e-64 247.7 184 69.6
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.0e-63 247.3 174 71.3
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.0e-63 247.3 205 65.9
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.3e-63 246.9 202 66.8
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.3e-63 246.9 180 72.2
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.3e-63 246.9 202 68.3
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.7e-63 246.5 201 65.7
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.7e-63 246.5 202 67.8
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 3.0e-63 245.7 205 65.4
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.0e-63 245.0 202 66.8
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 6.6e-63 244.6 176 72.2
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 6.6e-63 244.6 189 68.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 8.6e-63 244.2 186 67.2
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.5e-62 243.4 190 65.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.9e-62 243.0 207 64.3
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 2.5e-62 242.7 200 65.0
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 3.3e-62 242.3 205 64.9
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.3e-62 241.9 184 67.9
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.3e-62 241.9 155 77.4
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.3e-62 241.1 202 65.8
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 9.5e-62 240.7 183 69.4
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.2e-61 240.4 200 66.0
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 2.8e-61 239.2 198 66.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.8e-61 239.2 195 66.7
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.8e-61 239.2 195 66.7
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 2.8e-61 239.2 198 66.2
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.8e-61 239.2 174 71.8
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.2e-61 238.0 199 62.8
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.4e-60 236.9 192 66.7
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.4e-60 236.9 202 65.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.1e-60 235.7 205 60.5
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 4.0e-60 235.3 194 62.9
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.0e-60 235.3 187 65.2
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.2e-59 233.8 202 60.9
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.2e-59 233.8 186 66.7
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.5e-59 233.4 206 63.1
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.6e-59 232.6 196 63.8
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.4e-59 232.3 196 62.8
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.4e-59 232.3 160 75.6
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.4e-59 232.3 160 75.6
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 4.4e-59 231.9 206 58.7
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.5e-59 231.1 171 70.2
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 9.8e-59 230.7 176 68.2
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.3e-58 230.3 197 64.5
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.7e-58 229.9 206 60.2
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.7e-58 229.9 189 66.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.2e-58 229.6 227 59.5
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 2.2e-58 229.6 202 61.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 3.7e-58 228.8 176 67.0
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 4.9e-58 228.4 176 67.6
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 6.4e-58 228.0 190 65.8
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 4.1e-57 225.3 173 69.9
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.3e-55 219.5 179 62.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.1e-55 218.4 179 61.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.1e-55 218.4 192 62.5
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 5.1e-55 218.4 201 58.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.5e-54 216.1 172 64.5
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 7.3e-54 214.5 237 53.6
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.1e-53 213.0 201 60.2
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.8e-51 204.9 184 63.6
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.4e-49 198.4 146 69.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 6.0e-48 194.9 186 60.2
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 7.8e-48 194.5 226 53.1
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.0e-47 194.1 195 58.5
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.7e-47 193.4 179 57.0
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.6e-45 185.7 168 57.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.4e-44 183.0 171 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 3.2e-41 172.6 190 51.1
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 7.1e-41 171.4 155 56.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.6e-35 152.9 177 46.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.6e-35 151.4 170 47.1
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.7e-34 150.2 107 68.2
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.8e-34 149.1 107 76.6
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.9e-34 148.7 85 81.2
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.4e-33 147.1 106 78.3
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.2e-33 146.0 170 47.6
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.2e-32 144.1 107 68.2
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.6e-32 143.7 92 75.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.1e-32 143.3 111 65.8
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 6.0e-32 141.7 99 70.7
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.0e-31 141.0 132 60.6
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 5.1e-31 138.7 144 56.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.1e-30 137.5 102 70.6
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.0e-27 126.7 99 65.7
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.8e-23 113.6 90 71.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.4e-22 108.2 144 47.2
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.0e-15 87.8 87 55.2
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.0e-15 87.8 73 64.4
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.9e-15 85.9 138 37.0
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.4e-12 77.4 68 66.2
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 4.1e-12 75.9 76 51.3
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.0e-12 74.7 46 82.6
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.0e-10 71.2 67 55.2
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.4e-09 67.4 41 78.0
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 1.8e-07 60.5 43 74.4
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.0e-07 59.7 83 50.6
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.9e-07 59.3 103 43.7
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 5.1e-07 58.9 49 65.3
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 1.1e-06 57.8 43 72.1


User provided reference genes

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