Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv15790 Davidia involucrata HOM05D002450 ORTHO05D030943 3.5e-52 208.0 104 100.0
Actinidia34370 Actinidia chinensis HOM05D002450 ORTHO05D030943 1.6e-12 76.3 84 51.2
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 3.6e-12 75.1 110 39.1
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 2.3e-11 72.4 111 36.0
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 2.3e-11 72.4 110 38.2
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 3.0e-11 72.0 111 39.6
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 8.8e-11 70.5 104 38.5
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.1e-10 70.1 111 36.0
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.1e-10 70.1 109 36.7
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 1.5e-10 69.7 108 37.0
MBI15_g06332_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D010775 2.0e-10 69.3 109 38.5
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 4.3e-10 68.2 103 42.7
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 4.3e-10 68.2 111 36.9
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 5.7e-10 67.8 111 35.1
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 5.7e-10 67.8 106 38.7
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 7.4e-10 67.4 111 40.5
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 7.4e-10 67.4 111 36.0
RcHm_v2.0_Chr1g0327781 Rosa chinensis HOM05D002450 ORTHO05D002953 9.7e-10 67.0 99 43.4
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 1.3e-09 66.6 114 38.6
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 1.3e-09 66.6 108 39.8
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 1.7e-09 66.2 110 37.3
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.2e-09 65.9 111 35.1
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 2.2e-09 65.9 109 37.6
MD03G1150900 Malus domestica HOM05D002450 ORTHO05D002953 2.8e-09 65.5 107 35.5
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 4.8e-09 64.7 109 37.6
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 4.8e-09 64.7 103 41.7
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 4.8e-09 64.7 111 34.2
MBI14_g43560_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 4.8e-09 64.7 52 59.6
vmacro01974 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 4.8e-09 64.7 103 45.6
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 6.3e-09 64.3 110 38.2
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 8.2e-09 63.9 104 42.3
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 8.2e-09 63.9 111 38.7
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 8.2e-09 63.9 102 36.3
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 8.2e-09 63.9 113 39.8
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 1.1e-08 63.5 110 36.4
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 1.4e-08 63.2 111 36.9
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.4e-08 63.2 111 35.1
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 1.4e-08 63.2 113 38.9
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 1.8e-08 62.8 100 38.0
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 2.4e-08 62.4 107 38.3
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 3.1e-08 62.0 103 38.8
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 3.1e-08 62.0 100 38.0
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 3.1e-08 62.0 112 39.3
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 4.1e-08 61.6 110 36.4
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 4.1e-08 61.6 105 38.1
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 5.3e-08 61.2 97 38.1
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 5.3e-08 61.2 106 36.8
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 6.9e-08 60.8 110 37.3
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 6.9e-08 60.8 109 34.9
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.2e-07 60.1 110 37.3
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.5e-07 59.7 109 37.6
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 1.5e-07 59.7 79 44.3
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 2.0e-07 59.3 112 36.6
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 2.6e-07 58.9 111 34.2
vmacro21449 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 2.6e-07 58.9 111 35.1
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 2.6e-07 58.9 108 34.3
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 3.4e-07 58.5 98 35.7
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 4.5e-07 58.2 56 50.0
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 4.5e-07 58.2 112 37.5
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 4.5e-07 58.2 112 37.5
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 4.5e-07 58.2 109 33.0
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 4.5e-07 58.2 107 34.6
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 4.5e-07 58.2 104 33.7
TAR383G0391 Trochodendron aralioides HOM05D002450 ORTHO05D002953 4.5e-07 58.2 56 51.8
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 5.9e-07 57.8 107 36.4
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 7.7e-07 57.4 108 36.1
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 7.7e-07 57.4 112 36.6
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 1.0e-06 57.0 108 34.3
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 1.0e-06 57.0 109 34.9
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 1.3e-06 56.6 100 37.0
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.3e-06 56.6 112 36.6
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 1.7e-06 56.2 108 36.1
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 1.7e-06 56.2 104 36.5
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 1.7e-06 56.2 61 45.9
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 1.7e-06 56.2 109 33.0
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 2.2e-06 55.8 111 36.0
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 2.2e-06 55.8 107 38.3
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 2.2e-06 55.8 110 33.6
GSVIVG01037863001 Vitis vinifera HOM05D002450 ORTHO05D030943 2.9e-06 55.5 79 41.8
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 5.0e-06 54.7 111 35.1
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 5.0e-06 54.7 111 32.4
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 6.5e-06 54.3 108 33.3
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 6.5e-06 54.3 99 35.4
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 6.5e-06 54.3 56 50.0


User provided reference genes

Program Settings