Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 5.9e-207 724.2 417 100.0
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.5e-117 426.4 502 54.8
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 8.1e-116 421.4 501 51.7
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 9.9e-114 414.5 499 52.9
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 1.8e-107 393.7 441 57.6
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 5.5e-104 382.1 501 48.9
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 3.3e-101 372.9 503 47.5
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 9.6e-101 371.3 504 52.2
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 3.7e-100 369.4 504 48.2
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 2.4e-99 366.7 406 54.9
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 4.5e-98 362.5 575 44.7
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 5.8e-98 362.1 500 49.0
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 2.2e-97 360.1 506 46.8
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.1e-96 357.8 362 58.3
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 9.3e-96 354.8 500 48.6
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 7.9e-95 351.7 390 54.1
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 3.0e-94 349.7 485 48.0
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 8.7e-94 348.2 376 56.1
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 4.8e-92 342.4 376 54.0
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 8.2e-92 341.7 365 55.3
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 1.1e-91 341.3 506 46.8
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.8e-91 340.5 358 55.3
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.4e-91 340.1 364 55.2
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 1.2e-90 337.8 407 51.8
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.4e-90 336.3 369 53.4
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 5.0e-89 332.4 498 46.6
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 8.5e-89 331.6 410 48.8
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.4e-88 330.9 470 47.2
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 2.5e-88 330.1 383 51.2
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 4.2e-88 329.3 559 45.1
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 7.2e-88 328.6 379 52.0
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 4.6e-87 325.9 359 55.7
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 5.1e-86 322.4 407 49.1
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 8.7e-86 321.6 382 51.3
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 8.7e-86 321.6 372 51.3
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.5e-85 320.9 433 50.6
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 8.2e-84 315.1 368 51.1
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 1.4e-83 314.3 363 51.8
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.8e-83 313.9 368 50.5
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 9.1e-83 311.6 381 49.3
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 1.2e-82 311.2 498 42.6
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 1.2e-82 311.2 370 51.4
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 2.0e-82 310.5 375 49.6
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 2.0e-82 310.5 510 43.5
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 3.4e-82 309.7 366 50.3
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 1.0e-81 308.1 381 49.9
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 1.0e-81 308.1 374 49.7
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 1.0e-81 308.1 388 49.5
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.2e-81 307.0 370 50.5
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 3.8e-81 306.2 404 48.5
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 5.0e-81 305.8 377 49.3
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 6.5e-81 305.4 375 49.1
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 8.5e-81 305.1 382 48.2
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.4e-80 304.3 356 51.7
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 3.2e-80 303.1 422 47.6
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.2e-79 301.2 376 48.7
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 1.2e-79 301.2 356 51.1
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 2.1e-79 300.4 504 41.3
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.1e-79 298.9 384 49.2
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 7.9e-79 298.5 343 51.6
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.0e-78 298.1 385 48.3
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 3.0e-78 296.6 444 45.3
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 8.8e-78 295.0 362 50.3
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.1e-77 294.7 359 48.2
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 2.6e-77 293.5 357 51.5
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 4.4e-77 292.7 365 49.0
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 7.4e-77 292.0 324 53.1
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 4.1e-75 286.2 420 44.0
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 5.3e-75 285.8 366 49.7
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 6.9e-75 285.4 326 51.2
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 5.9e-74 282.3 394 46.4
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 5.9e-74 282.3 342 51.2
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 3.8e-73 279.6 358 48.0
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 6.5e-73 278.9 348 48.3
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.5e-73 278.9 359 49.0
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 8.5e-73 278.5 350 50.3
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 1.4e-72 277.7 362 47.5
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.9e-72 277.3 327 51.1
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.9e-70 269.6 364 46.4
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.6e-69 266.9 373 46.9
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 6.3e-68 262.3 285 53.7
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 1.1e-67 261.5 312 51.0
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.8e-67 260.8 300 51.7
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 2.4e-67 260.4 373 41.6
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.1e-67 260.0 274 53.6
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 4.1e-67 259.6 355 46.8
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 9.1e-67 258.5 356 43.8
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.9e-64 250.8 329 48.9
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.8e-60 236.1 287 46.7
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 3.5e-58 229.9 294 45.6
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 7.7e-58 228.8 390 43.6
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.3e-57 228.0 328 44.5
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 1.5e-56 224.6 385 43.6
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 4.1e-51 206.5 304 43.4
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 3.5e-50 203.4 462 34.6
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.7e-49 201.1 257 47.1
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.0e-49 199.5 164 65.2
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.2e-48 196.8 274 46.4
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-46 191.8 359 40.9
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 2.3e-46 190.7 179 60.9
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.0e-46 190.3 235 46.8
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 3.4e-45 186.8 170 60.0
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 3.7e-44 183.3 238 48.3
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 7.8e-42 175.6 220 50.0
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.7e-36 157.9 299 33.4
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 8.3e-36 155.6 267 42.3
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 9.2e-35 152.1 118 63.6
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 9.2e-35 152.1 174 47.7
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 2.3e-30 137.5 98 71.4
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 3.1e-30 137.1 121 60.3
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 5.2e-30 136.3 105 64.8
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 2.6e-29 134.0 106 62.3
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 3.7e-28 130.2 221 43.4
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 4.9e-28 129.8 188 44.7
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 4.9e-28 129.8 233 38.6
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 4.1e-27 126.7 147 51.7
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 6.6e-25 119.4 186 40.3
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 1.4e-22 111.7 88 64.8
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 2.3e-22 110.9 60 81.7
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 2.6e-21 107.5 70 68.6
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.3e-20 105.1 165 40.0
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.7e-17 94.7 186 33.9
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 2.1e-15 87.8 160 40.0
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 4.4e-13 80.1 65 61.5
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 1.3e-12 78.6 120 46.7
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 1.3e-12 78.6 44 84.1
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 4.9e-12 76.6 55 65.5
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 1.1e-11 75.5 119 46.2
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 1.4e-11 75.1 52 67.3
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 9.2e-11 72.4 76 51.3
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 2.1e-10 71.2 108 39.8
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 1.2e-07 62.0 60 43.3
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 2.1e-07 61.2 253 28.9
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 2.8e-07 60.8 72 44.4
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 4.0e-06 57.0 45 57.8


User provided reference genes

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