Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 6.4e-197 690.6 374 100.0
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 7.9e-163 577.4 379 84.7
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 2.3e-162 575.9 372 86.3
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.0e-161 572.8 382 85.3
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 6.1e-155 551.2 378 80.2
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.0e-154 550.4 380 82.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.3e-152 543.5 387 79.8
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 8.2e-152 540.8 365 81.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.3e-151 538.1 345 85.5
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.0e-150 536.2 372 78.8
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.3e-149 533.5 376 78.2
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 5.0e-149 531.6 376 76.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 6.5e-149 531.2 382 79.1
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 6.5e-149 531.2 378 79.6
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.1e-148 530.4 378 79.4
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.9e-148 529.6 378 79.6
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 4.2e-148 528.5 378 78.8
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 3.6e-147 525.4 375 77.3
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 8.0e-147 524.2 328 86.0
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.4e-146 523.5 343 84.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.4e-146 523.5 379 77.0
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.8e-146 523.1 375 76.8
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.3e-146 522.7 351 81.5
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.2e-145 520.4 369 77.8
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.7e-144 516.5 381 77.4
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 6.3e-144 514.6 362 78.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 8.2e-144 514.2 372 76.6
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.4e-143 513.5 354 80.8
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.8e-143 513.1 322 84.8
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.8e-143 513.1 350 81.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 2.4e-143 512.7 328 83.5
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 4.1e-143 511.9 376 76.3
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.2e-142 510.4 380 75.5
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.6e-142 510.0 375 76.8
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.5e-142 508.8 374 75.4
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 5.9e-142 508.1 369 75.9
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.0e-141 507.3 376 76.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-141 506.9 376 75.5
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 3.8e-141 505.4 361 78.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 5.0e-141 505.0 370 76.2
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-140 503.8 360 72.5
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.5e-140 503.4 369 77.5
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.5e-140 503.4 371 74.9
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.9e-140 503.1 371 75.2
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.9e-140 503.1 375 77.1
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 9.4e-140 500.7 376 73.4
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-139 500.4 373 75.1
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-139 500.4 371 73.6
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-139 500.4 371 74.1
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.6e-139 500.0 371 77.6
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.6e-139 500.0 372 76.9
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 3.6e-139 498.8 364 76.1
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 4.7e-139 498.4 376 75.3
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 8.0e-139 497.7 345 78.8
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.3e-138 496.1 362 76.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 3.0e-138 495.7 343 80.5
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 4.0e-138 495.4 371 73.3
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 1.2e-137 493.8 380 71.8
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.2e-137 493.8 343 78.7
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.5e-137 493.4 374 73.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.6e-137 492.7 380 73.2
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 3.4e-137 492.3 373 74.0
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.3e-136 490.3 357 75.4
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.3e-136 487.6 373 72.7
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.1e-135 487.3 374 71.4
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.4e-135 486.9 336 80.1
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 4.1e-135 485.3 358 74.3
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.0e-134 483.0 372 71.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.0e-134 483.0 368 72.8
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 4.5e-134 481.9 360 76.1
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 5.9e-134 481.5 370 71.4
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.0e-133 480.7 368 72.6
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 3.8e-133 478.8 355 74.6
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 5.0e-133 478.4 377 70.8
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 6.6e-133 478.0 351 75.2
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.2e-132 475.3 376 71.0
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.2e-132 475.3 334 76.6
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 5.5e-132 474.9 373 72.1
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 9.5e-132 474.2 330 79.7
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.2e-131 473.8 373 71.8
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.8e-131 472.6 374 71.7
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.6e-131 472.2 374 71.7
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 4.7e-131 471.9 373 71.8
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 8.0e-131 471.1 375 72.0
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-130 470.7 372 72.8
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-130 470.7 376 71.5
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.0e-130 470.7 374 71.9
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.0e-130 470.7 374 71.9
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.4e-130 470.3 323 79.9
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.4e-130 470.3 379 69.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 3.0e-130 469.2 371 71.2
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 3.0e-130 469.2 374 71.7
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 3.0e-130 469.2 374 71.7
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 6.8e-130 468.0 374 71.7
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.8e-130 468.0 375 70.9
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 8.9e-130 467.6 375 71.2
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 1.2e-129 467.2 375 71.5
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.0e-129 466.5 352 74.4
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.6e-129 466.1 340 76.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.4e-129 465.3 355 73.8
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 5.7e-129 464.9 356 73.6
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 5.7e-129 464.9 356 73.6
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 9.8e-129 464.2 374 70.9
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.8e-128 462.6 374 71.1
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 6.3e-128 461.5 355 73.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.1e-127 460.7 352 71.3
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.8e-127 459.9 357 73.7
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.5e-124 450.3 369 69.4
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 7.3e-124 448.0 371 68.2
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.2e-122 441.8 376 67.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.8e-121 438.3 376 66.2
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.7e-120 436.8 376 66.0
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 2.9e-120 436.0 371 67.7
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 1.6e-118 430.3 370 68.6
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.3e-117 427.2 376 62.2
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 6.6e-117 424.9 334 70.7
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 8.6e-117 424.5 326 70.6
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.6e-105 386.3 375 62.4
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 4.1e-103 379.0 320 69.4
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 1.3e-101 374.0 336 62.2
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.7e-101 373.6 247 84.2
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.5e-100 370.5 325 63.1
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 5.6e-100 368.6 363 58.7
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-99 366.3 299 70.9
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.3e-93 346.7 338 59.2
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.6e-92 341.3 297 60.9
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 1.1e-90 337.8 243 77.8
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.4e-90 337.4 206 82.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 3.1e-90 336.3 372 53.8
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 9.0e-90 334.7 290 67.2
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.9e-89 331.3 363 56.5
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.1e-87 327.8 324 57.7
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 6.4e-80 302.0 345 55.9
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.0e-78 295.4 325 53.8
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.0e-70 268.9 243 59.3
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.1e-68 264.6 209 69.9
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.2e-59 233.8 130 93.1
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.5e-52 210.3 208 54.8
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.6e-44 183.7 165 58.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.7e-43 181.0 148 66.9
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.0e-37 161.8 164 58.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 7.4e-36 155.6 90 83.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 4.8e-35 152.9 102 73.5
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 3.8e-32 143.3 97 74.2
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.5e-31 141.4 128 63.3
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 2.3e-29 134.0 91 70.3
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 7.7e-25 119.0 287 33.4
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 5.0e-24 116.3 114 57.0
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 8.5e-24 115.5 78 74.4
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.7e-22 110.5 124 52.4
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 6.1e-22 109.4 80 67.5
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.3e-19 99.4 105 51.4
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.1e-18 98.6 183 37.2
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 3.1e-18 97.1 64 76.6
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-17 94.0 66 71.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.1e-15 88.6 317 30.6
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.2e-14 85.1 315 29.5
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 9.8e-12 75.5 59 64.4
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.3e-11 72.8 52 69.2
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.4e-10 71.6 52 67.3
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.2e-10 70.5 43 74.4
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 9.2e-10 68.9 50 64.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 3.5e-09 67.0 62 56.5
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.5e-09 67.0 52 65.4
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.0e-08 65.5 63 55.6
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 78 48.7
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 78 48.7
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-08 65.1 46 67.4
TAR625G0182 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.3e-08 64.3 82 46.3
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-07 61.6 52 59.6
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.9e-07 61.2 67 76.1
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.3e-07 59.3 47 59.6
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 9.5e-07 58.9 69 49.3
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-06 57.4 69 47.8


User provided reference genes

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