Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv14074 Davidia involucrata HOM05D000225 ORTHO05D003554 6.3e-106 387.5 201 100.0
Dinv44611 Davidia involucrata HOM05D000225 ORTHO05D003554 3.1e-28 129.4 356 30.6
Lj6A653G77 Lonicera japonica HOM05D000225 ORTHO05D003554 1.2e-21 107.5 92 66.3
QL06p015040 Quercus lobata HOM05D000225 ORTHO05D003554 1.2e-21 107.5 92 60.9
Duzib151G1111 Durio zibethinus HOM05D000225 ORTHO05D003554 2.1e-21 106.7 92 66.3
TWI09G0570 Tripterygium wilfordii HOM05D000225 ORTHO05D003554 2.1e-21 106.7 80 66.2
Hma1.2p1_2099F.1_g313990 Hydrangea macrophylla HOM05D000225 ORTHO05D003554 4.7e-21 105.5 362 28.2
Actinidia08450 Actinidia chinensis HOM05D000225 ORTHO05D003554 6.2e-21 105.1 92 62.0
Atru.chr4.2285 Acer truncatum HOM05D000225 ORTHO05D003554 8.1e-21 104.8 92 58.7
Potri.010G078700 Populus trichocarpa HOM05D000225 ORTHO05D003554 3.1e-20 102.8 93 65.6
GSVIVG01018093001 Vitis vinifera HOM05D000225 ORTHO05D003554 3.1e-20 102.8 93 62.4
Sabra08G0122400 Salix brachista HOM05D000225 ORTHO05D003554 4.0e-20 102.4 93 64.5
Cfa008400 Carpinus fangiana HOM05D000225 ORTHO05D003554 5.3e-20 102.1 92 57.6
Manes.15G035700 Manihot esculenta HOM05D000225 ORTHO05D003554 5.3e-20 102.1 92 62.0
Potri.008G160600 Populus trichocarpa HOM05D000225 ORTHO05D003554 6.9e-20 101.7 94 62.8
Haze_11269 Corylus avellana HOM05D000225 ORTHO05D003554 9.0e-20 101.3 92 57.6
Cc00_g20680 Coffea canephora HOM05D000225 ORTHO05D003554 1.5e-19 100.5 92 57.6
Gohir.A09G222000 Gossypium hirsutum HOM05D000225 ORTHO05D003554 3.4e-19 99.4 92 60.9
Nn1g02547 Nelumbo nucifera HOM05D000225 ORTHO05D003554 4.4e-19 99.0 92 59.8
Ciclev10004551m.g Citrus clementina HOM05D000225 ORTHO05D003554 5.8e-19 98.6 92 60.9
CSS0010297 Camellia sinensis var. sinensis HOM05D000225 ORTHO05D003554 7.6e-19 98.2 93 60.2
vmacro17028 Vaccinium macrocarpon HOM05D003054 ORTHO05D003376 7.6e-19 98.2 92 62.0
Thecc.04G243700 Theobroma cacao HOM05D000225 ORTHO05D003554 9.9e-19 97.8 92 60.9
Aqoxy2G03515 Aquilegia oxysepala HOM05D000225 ORTHO05D003554 1.7e-18 97.1 80 61.2
MSTRG.9933 Avicennia marina HOM05D000225 ORTHO05D003554 2.2e-18 96.7 356 25.0
CiPaw.01G192400 Carya illinoinensis HOM05D000225 ORTHO05D003554 4.9e-18 95.5 92 58.7
COL.COLO4_15766 Corchorus olitorius HOM05D000225 ORTHO05D003554 4.9e-18 95.5 92 59.8
vmacro15400 Vaccinium macrocarpon HOM05D000225 ORTHO05D003554 6.4e-18 95.1 92 60.9
Gohir.D09G224100 Gossypium hirsutum HOM05D000225 ORTHO05D003554 1.4e-17 94.0 92 58.7
Gorai.006G245600 Gossypium raimondii HOM05D000225 ORTHO05D003554 1.4e-17 94.0 92 58.7
Nitab4.5_0004203g0010 Nicotiana tabacum HOM05D000225 ORTHO05D003554 2.4e-17 93.2 80 60.0
Rhsim02G0032400 Rhododendron simsii HOM05D000225 ORTHO05D003554 2.4e-17 93.2 92 57.6
Ah.08g213660 Amaranthus hybridus HOM05D000225 ORTHO05D003554 3.2e-17 92.8 92 53.3
RcHm_v2.0_Chr4g0389541 Rosa chinensis HOM05D000225 ORTHO05D003554 3.2e-17 92.8 80 60.0
SalBow2G2098 Salvia bowleyana HOM05D000225 ORTHO05D003554 3.2e-17 92.8 75 56.0
Lsat_1_v5_gn_3_124400 Lactuca sativa HOM05D000225 ORTHO05D003554 1.2e-16 90.9 73 61.6
Peaxi162Scf01416g00014 Petunia axillaris HOM05D000225 ORTHO05D003554 1.2e-16 90.9 92 55.4
DCAR_002357 Daucus carota HOM05D000225 ORTHO05D003554 1.6e-16 90.5 92 54.3
Prupe.1G027000 Prunus persica HOM05D000225 ORTHO05D003554 1.6e-16 90.5 92 54.3
FvH4_4g02221 Fragaria vesca HOM05D000225 ORTHO05D003554 2.7e-16 89.7 80 57.5
FAN12G1174 Fragaria x ananassa HOM05D000225 ORTHO05D003554 2.7e-16 89.7 80 57.5
TAR362G1029 Trochodendron aralioides HOM05D000225 ORTHO05D003554 2.7e-16 89.7 92 53.3
CANSAT78G0865 Cannabis sativa HOM05D000225 ORTHO05D003554 3.5e-16 89.4 92 53.3
Hund05492 Selenicereus undatus HOM05D000225 ORTHO05D003554 3.5e-16 89.4 92 52.2
DCAR_030708 Daucus carota HOM05D000225 ORTHO05D003554 6.0e-16 88.6 92 56.5
HanXRQChr03g0092501 Helianthus annuus HOM05D000225 ORTHO05D003554 6.0e-16 88.6 92 50.0
MD13G1203800 Malus domestica HOM05D000225 ORTHO05D003554 7.8e-16 88.2 92 51.1
MSTRG.4088 Avicennia marina HOM05D000225 ORTHO05D003554 1.0e-15 87.8 85 55.3
Gorai.011G164600 Gossypium raimondii HOM05D000225 ORTHO05D003554 2.3e-15 86.7 90 55.6
HanXRQChr13g0424591 Helianthus annuus HOM05D000225 ORTHO05D003554 3.0e-15 86.3 92 53.3
Nitab4.5_0000525g0010 Nicotiana tabacum HOM05D000225 ORTHO05D003554 3.9e-15 85.9 327 26.6
ClCG05G004700 Citrullus lanatus HOM05D000225 ORTHO05D003554 5.1e-15 85.5 92 47.8
FAN17G2834 Fragaria x ananassa HOM05D000225 ORTHO05D003554 1.1e-14 84.3 78 56.4
Gohir.D10G147500 Gossypium hirsutum HOM05D000225 ORTHO05D003554 1.1e-14 84.3 108 50.0
Sed0011890 Sechium edule HOM05D000225 ORTHO05D003554 1.1e-14 84.3 92 48.9
MD16G1205900 Malus domestica HOM05D000225 ORTHO05D003554 1.5e-14 84.0 89 47.2
PGSC0003DMG400006088 Solanum tuberosum HOM05D000225 ORTHO05D003554 1.5e-14 84.0 92 50.0
Nitab4.5_0000525g0070 Nicotiana tabacum HOM05D000225 ORTHO05D003554 1.9e-14 83.6 111 47.7
Sc19g0003890 Simmondsia chinensis HOM05D000225 ORTHO05D003554 1.9e-14 83.6 95 51.6
PSO210G5248 Papaver somniferum HOM05D000225 ORTHO05D003554 2.5e-14 83.2 90 46.7
PGSC0003DMG400006086 Solanum tuberosum HOM05D000225 ORTHO05D003554 2.5e-14 83.2 92 48.9
PGSC0003DMG400006087 Solanum tuberosum HOM05D000225 ORTHO05D003554 2.5e-14 83.2 92 48.9
ECA240G1015 Erigeron canadensis HOM05D000225 ORTHO05D003554 3.3e-14 82.8 93 50.5
PSO238G0035 Papaver somniferum HOM05D000225 ORTHO05D003554 4.3e-14 82.4 92 45.7
Sopen09g032130 Solanum pennellii HOM05D000225 ORTHO05D003554 5.6e-14 82.0 92 48.9
Nitab4.5_0000525g0040 Nicotiana tabacum HOM05D000225 ORTHO05D003554 1.3e-13 80.9 81 53.1
EL10Ac7g17698 Beta vulgaris HOM05D000225 ORTHO05D003554 1.6e-13 80.5 80 52.5
MELO3C006481.2 Cucumis melo HOM05D000225 ORTHO05D003554 1.6e-13 80.5 93 49.5
Lalb_Chr03g0037921 Lupinus albus HOM05D000225 ORTHO05D003554 2.1e-13 80.1 94 50.0
MBI04_g35054_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D003554 2.1e-13 80.1 75 50.7
Solyc09g083210.3 Solanum lycopersicum HOM05D000225 ORTHO05D003554 2.1e-13 80.1 92 48.9
Sabra10G0064600 Salix brachista HOM05D000225 ORTHO05D003554 2.8e-13 79.7 81 55.6
Sopen09g032120 Solanum pennellii HOM05D000225 ORTHO05D003554 2.8e-13 79.7 92 48.9
CsaV3_3G012700 Cucumis sativus L. HOM05D000225 ORTHO05D003554 3.6e-13 79.3 93 47.3
SHI00572 Sapria himalayana HOM05D000225 ORTHO05D003554 3.6e-13 79.3 92 52.2
VMungo0720G0757 Vigna mungo HOM05D000225 ORTHO05D003554 3.6e-13 79.3 94 50.0
Solyc10g045610.1 Solanum lycopersicum HOM05D000225 ORTHO05D003554 4.8e-13 79.0 92 46.7
CAN.G626.4 Capsicum annuum HOM05D000225 ORTHO05D003554 6.2e-13 78.6 92 47.8
AUR62008808 Chenopodium quinoa HOM05D000225 ORTHO05D003554 6.2e-13 78.6 81 51.9
Ca_26325_v3 Cicer arietinum L. HOM05D000225 ORTHO05D003554 8.1e-13 78.2 94 51.1
Lj6g0021940 Lotus japonicus HOM05D000225 ORTHO05D003554 8.1e-13 78.2 93 51.6
arahy.Tifrunner.gnm1.ann1.35XI12 Arachis hypogaea HOM05D000225 ORTHO05D003554 1.1e-12 77.8 94 45.7
Eucgr.H03181 Eucalyptus grandis HOM05D000225 ORTHO05D003554 1.1e-12 77.8 78 48.7
arahy.Tifrunner.gnm1.ann1.2WY12S Arachis hypogaea HOM05D000225 ORTHO05D003554 1.4e-12 77.4 94 46.8
AUR62025430 Chenopodium quinoa HOM05D000225 ORTHO05D003554 1.8e-12 77.0 81 51.9
ATR0661G139 Amborella trichopoda HOM05D000225 ORTHO05D003554 3.1e-12 76.3 92 50.0
Medtr5g042440 Medicago truncatula HOM05D000225 ORTHO05D003554 3.1e-12 76.3 81 50.6
Psat6g102960 Pisum sativum HOM05D000225 ORTHO05D003554 3.1e-12 76.3 93 47.3
TPR.G22481 Trifolium pratense HOM05D000225 ORTHO05D003554 5.3e-12 75.5 93 46.2
Phvul.007G280200 Phaseolus vulgaris HOM05D000225 ORTHO05D003554 1.2e-11 74.3 94 46.8
AUR62008809 Chenopodium quinoa HOM05D000225 ORTHO05D003554 1.5e-11 73.9 81 48.1
Glyma.02G000400 Glycine max HOM05D000225 ORTHO05D003554 3.4e-11 72.8 94 50.0
AUR62025429 Chenopodium quinoa HOM05D000225 ORTHO05D003554 5.8e-11 72.0 81 48.1
AUR62025432 Chenopodium quinoa HOM05D000225 ORTHO05D003554 5.8e-11 72.0 81 48.1
Os02g0681700 Oryza sativa ssp. japonica HOM05D000225 ORTHO05D003554 1.7e-10 70.5 93 44.1
PGR004G2440 Punica granatum HOM05D000225 ORTHO05D003554 4.9e-10 68.9 93 45.2
Zm00001eb250700 Zea mays HOM05D000225 ORTHO05D003554 2.4e-09 66.6 93 44.1
Aqoxy102s012 Aquilegia oxysepala HOM05D000225 ORTHO05D003554 2.7e-08 63.2 121 42.1
Sc19g0003880 Simmondsia chinensis HOM05D000225 ORTHO05D003554 2.7e-08 63.2 81 48.1
Solyc09g083200.4 Solanum lycopersicum HOM05D000225 ORTHO05D003554 2.7e-08 63.2 93 41.9
MD13G1203700 Malus domestica HOM05D000225 ORTHO05D003554 3.5e-08 62.8 89 43.8
Migut.G00415 Erythranthe guttata HOM05D000225 ORTHO05D003554 4.6e-08 62.4 77 41.6
CDE04G3436 Ceratophyllum demersum HOM05D000225 ORTHO05D003554 7.9e-08 61.6 93 46.2
Nn3g19499 Nelumbo nucifera HOM05D000225 ORTHO05D003554 1.0e-07 61.2 92 42.4
HPP92_014519 Vanilla planifolia HOM05D001408 ORTHO05D003554 3.9e-07 59.3 92 42.4
FAN22G1499 Fragaria x ananassa HOM05D000225 ORTHO05D003554 5.1e-07 58.9 88 42.0
Nitab4.5_0000525g0080 Nicotiana tabacum HOM05D000225 ORTHO05D003554 9.6e-06 54.7 52 53.8


User provided reference genes

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