Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 1.3e-132 476.5 250 100.0
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 1.3e-81 307.0 225 72.4
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 9.9e-77 290.8 224 72.8
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 1.3e-76 290.4 224 72.8
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 4.2e-75 285.4 223 72.2
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 2.7e-74 282.7 221 71.9
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 3.0e-73 279.3 220 68.6
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 6.2e-71 271.6 230 64.3
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 2.4e-70 269.6 220 66.8
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 3.1e-70 269.2 221 68.8
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 6.9e-70 268.1 230 64.3
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 5.8e-69 265.0 221 67.4
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 7.6e-69 264.6 220 62.7
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 9.9e-69 264.2 258 60.1
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 1.3e-68 263.8 220 65.9
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 5.5e-67 258.5 237 63.3
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 2.7e-66 256.1 228 64.0
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 2.3e-65 253.1 228 60.1
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 1.5e-64 250.4 220 64.5
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 1.9e-64 250.0 230 60.9
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 2.5e-64 249.6 243 58.8
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 3.3e-64 249.2 221 64.3
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 9.6e-64 247.7 221 62.4
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 2.8e-63 246.1 235 58.3
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 6.2e-63 245.0 224 58.9
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 1.4e-62 243.8 235 58.3
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 1.2e-61 240.7 236 57.2
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 1.5e-61 240.4 222 64.4
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 2.0e-61 240.0 228 62.7
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 7.6e-61 238.0 229 60.3
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 1.0e-60 237.7 225 60.4
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 2.9e-60 236.1 233 58.8
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 8.4e-60 234.6 211 62.6
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 1.1e-59 234.2 219 61.6
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 1.9e-59 233.4 225 57.8
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 2.5e-59 233.0 223 59.6
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 2.5e-59 233.0 212 61.8
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 3.2e-59 232.6 204 63.2
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 3.2e-59 232.6 219 61.6
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 3.2e-59 232.6 219 61.2
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 5.5e-59 231.9 234 59.0
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 9.3e-59 231.1 213 60.6
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.2e-58 230.7 204 62.7
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 1.2e-58 230.7 223 60.1
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 1.6e-58 230.3 223 58.7
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 2.7e-58 229.6 218 59.2
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 3.5e-58 229.2 222 57.2
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 1.0e-57 227.6 222 57.2
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 1.0e-57 227.6 215 58.6
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 1.3e-57 227.3 227 57.7
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 1.8e-57 226.9 228 57.5
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 3.0e-57 226.1 231 57.1
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 2.5e-56 223.0 229 57.2
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 3.3e-56 222.6 228 55.7
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 4.3e-56 222.2 229 55.0
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 7.4e-56 221.5 271 49.4
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 9.6e-56 221.1 215 56.7
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 1.3e-55 220.7 231 54.5
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 2.8e-55 219.5 228 56.6
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 2.8e-55 219.5 218 58.7
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 3.7e-55 219.2 225 55.6
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 1.4e-54 217.2 225 58.2
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 3.1e-54 216.1 227 53.3
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 4.1e-54 215.7 221 56.6
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 5.3e-54 215.3 227 55.1
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.9e-54 214.9 225 54.7
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 9.0e-54 214.5 224 56.2
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 1.5e-53 213.8 228 56.1
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 2.6e-53 213.0 219 57.5
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 5.9e-53 211.8 233 55.8
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 2.9e-52 209.5 216 54.6
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 3.8e-52 209.1 212 56.6
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 3.8e-52 209.1 211 57.3
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 5.0e-52 208.8 220 54.5
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 5.0e-52 208.8 224 54.0
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 5.0e-52 208.8 227 54.6
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 6.5e-52 208.4 222 55.0
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 8.5e-52 208.0 225 52.4
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 1.1e-51 207.6 220 54.1
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 3.2e-51 206.1 216 52.8
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 5.5e-51 205.3 222 55.0
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 1.2e-50 204.1 216 54.6
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 1.6e-50 203.8 222 52.3
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 2.1e-50 203.4 213 54.0
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 2.7e-50 203.0 218 52.8
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 2.7e-50 203.0 220 55.5
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 6.1e-50 201.8 232 53.9
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 7.9e-50 201.4 219 53.4
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 7.9e-50 201.4 224 54.5
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 6.7e-49 198.4 229 50.7
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 5.7e-48 195.3 217 53.0
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 3.7e-47 192.6 285 42.8
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 3.7e-47 192.6 440 35.5
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 6.3e-47 191.8 229 48.5
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 6.9e-46 188.3 201 54.7
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 2.0e-45 186.8 105 91.4
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 2.6e-45 186.4 256 48.0
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 7.7e-45 184.9 199 51.8
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 5.1e-41 172.2 240 46.2
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 2.6e-40 169.9 188 50.5
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 7.4e-40 168.3 231 44.6
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 9.7e-40 167.9 216 46.3
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 3.8e-36 156.0 214 44.4
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 3.2e-35 152.9 298 38.3
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 1.0e-33 147.9 146 56.8
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 1.3e-31 141.0 200 43.0
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 8.5e-28 128.3 97 64.9
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 5.5e-27 125.6 165 43.0
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 5.5e-27 125.6 206 39.3
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 4.7e-26 122.5 200 41.5
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 2.0e-24 117.1 94 67.0
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 4.8e-23 112.5 85 71.8
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 2.4e-22 110.2 129 48.1
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 1.1e-19 101.3 217 35.5
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 5.2e-17 92.4 216 35.6
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 2.0e-16 90.5 216 34.3
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 1.8e-14 84.0 115 43.5
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 1.2e-13 81.3 103 43.7
PSO170G2099 Papaver somniferum HOM05D006271 ORTHO05D008237 1.5e-11 74.3 238 29.0
PSO017G3993 Papaver somniferum HOM05D006271 ORTHO05D008237 4.2e-11 72.8 218 28.4
BolC4t27428H Brassica oleracea HOM05D006271 ORTHO05D023853 8.8e-09 65.1 204 34.8
C04p59170 Brassica napus HOM05D006271 ORTHO05D023853 5.7e-08 62.4 206 33.0
Gohir.D04G091316 Gossypium hirsutum HOM05D046112 ORTHO05D046880 8.3e-07 58.5 41 73.2
Gorai.009G397300 Gossypium raimondii HOM05D046112 ORTHO05D046880 8.3e-07 58.5 41 73.2


User provided reference genes

Program Settings