Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1470.7 751 100.0
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1268.8 758 86.1
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1247.6 758 84.2
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1239.6 795 81.1
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1232.2 772 82.4
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1219.1 760 81.4
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1196.4 758 81.3
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1195.3 758 81.4
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1193.7 746 80.4
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1192.6 758 80.9
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 0.0e+00 1173.7 709 85.0
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1173.3 758 78.8
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1168.3 757 77.9
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1166.0 758 78.1
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1165.6 759 79.2
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1163.3 774 77.0
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1158.3 749 78.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 0.0e+00 1155.6 765 77.1
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1148.3 756 78.4
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1144.0 756 77.4
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1141.3 752 76.7
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1139.4 749 76.9
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 0.0e+00 1139.4 750 77.7
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1132.5 745 78.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1129.4 746 77.3
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 0.0e+00 1128.6 756 77.2
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 0.0e+00 1128.6 762 75.9
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1128.2 765 75.9
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1126.3 774 75.1
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1126.3 751 75.9
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1125.2 774 75.1
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 0.0e+00 1125.2 753 76.2
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 0.0e+00 1123.6 749 76.2
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1122.5 755 76.3
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1122.1 751 75.8
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1120.1 758 75.5
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1119.0 754 76.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1117.8 755 76.4
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1117.8 758 75.3
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1116.7 759 74.0
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1115.5 751 75.5
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1115.1 755 76.2
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1114.0 759 75.0
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1112.8 760 75.8
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1112.8 751 75.4
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1108.6 758 75.1
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 0.0e+00 1105.5 745 76.1
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1104.7 758 75.2
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1104.7 751 75.2
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1104.4 747 74.0
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 750 74.8
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1103.6 751 74.4
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1103.2 747 74.3
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1101.3 758 75.1
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1092.4 751 74.2
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1092.0 757 74.1
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1087.8 757 73.3
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1087.4 758 74.0
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1087.4 764 74.6
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 0.0e+00 1087.4 760 72.4
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1087.0 762 74.5
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 0.0e+00 1085.9 764 73.8
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 0.0e+00 1083.2 760 72.1
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 0.0e+00 1081.6 751 74.7
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1080.9 751 73.1
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 0.0e+00 1078.9 758 73.4
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 0.0e+00 1076.6 764 73.6
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 0.0e+00 1075.5 760 72.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 5.1e-312 1074.7 752 73.5
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 8.6e-310 1066.6 758 72.7
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 8.6e-310 1066.6 754 71.4
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.7e-308 1060.8 754 71.4
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.1e-307 1059.7 756 70.9
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.2e-305 1052.0 761 72.1
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.2e-304 1048.1 743 73.6
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 3.9e-302 1041.2 688 78.8
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.1e-301 1039.6 754 69.9
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 9.6e-301 1036.6 755 70.1
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 4.0e-299 1031.2 756 69.0
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.1e-296 1023.1 766 70.2
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.3e-294 1016.1 758 68.3
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.8e-294 1015.8 783 67.2
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 2.5e-293 1011.9 760 68.3
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 2.5e-293 1011.9 760 68.3
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 9.6e-293 1010.0 751 68.3
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 9.6e-293 1010.0 751 68.3
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.0e-291 1004.6 755 67.9
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 6.9e-291 1003.8 753 67.6
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 6.9e-291 1003.8 753 67.6
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 2.2e-289 998.8 760 67.9
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 2.2e-289 998.8 760 67.9
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 4.9e-289 997.7 753 67.3
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.8e-286 989.2 756 66.5
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.0e-286 988.4 769 68.5
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 8.7e-278 960.3 752 67.0
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 3.3e-277 958.4 735 68.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.6e-271 939.5 623 75.6
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 3.9e-270 934.9 522 91.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.1e-269 933.3 659 72.1
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 7.4e-269 930.6 757 63.9
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.9e-264 916.0 703 67.4
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 7.2e-264 914.1 762 62.9
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 2.2e-260 902.5 760 61.7
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 9.1e-259 897.1 745 62.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.5e-258 896.3 757 62.2
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 3.8e-257 891.7 758 62.3
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 3.8e-257 891.7 758 62.3
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 3.9e-254 881.7 822 59.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.1e-253 880.2 756 61.2
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 3.6e-247 858.6 723 61.8
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.4e-243 845.9 528 81.6
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.1e-240 837.0 756 57.9
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.1e-240 837.0 644 68.0
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 6.8e-230 801.2 758 57.8
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.2e-229 800.4 532 76.5
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.4e-221 772.3 763 55.2
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.0e-218 763.1 720 57.4
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 6.6e-217 758.1 545 73.6
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 9.5e-216 754.2 530 70.2
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.2e-213 747.3 757 53.4
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 7.5e-213 744.6 744 53.1
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 4.7e-199 698.7 763 53.2
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 9.9e-197 691.0 732 51.2
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 6.5e-164 582.0 387 77.5
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.1e-160 571.2 607 51.2
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 8.0e-138 495.4 390 65.4
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 4.2e-131 473.0 345 70.4
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 3.1e-118 430.3 729 36.4
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 2.6e-112 410.6 479 51.1
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.0e-100 372.1 345 59.7
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 4.3e-91 340.1 745 29.8
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.7e-85 320.9 833 29.8
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.3e-84 318.5 219 74.9
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 5.1e-76 290.0 526 40.1
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.8e-66 256.9 223 64.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 4.2e-46 190.7 194 52.6
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.1e-41 176.0 151 63.6
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 5.3e-41 173.7 124 68.5
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 5.7e-35 153.7 92 81.5
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 3.7e-34 151.0 131 62.6
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 2.4e-33 148.3 113 64.6
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 9.1e-33 146.4 102 68.6
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.2e-30 137.5 218 44.0
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 3.6e-29 134.4 234 42.3
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.8e-28 132.1 139 52.5
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 6.7e-28 130.2 229 39.7
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.6e-27 128.3 80 77.5
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.7e-21 108.2 98 53.1
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.7e-19 100.5 75 72.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.1e-17 96.3 314 28.3
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.4e-17 95.9 92 55.4
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 3.1e-17 94.7 118 46.6
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.8e-12 79.0 64 60.9
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 8.8e-12 76.6 56 66.1
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.5e-11 75.9 79 54.4
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 6.3e-10 70.5 73 52.1
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 6.3e-10 70.5 73 52.1
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 4.1e-09 67.8 73 50.7
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.2e-08 66.2 88 44.3
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 3.5e-08 64.7 67 53.7
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.9e-07 61.6 63 50.8


User provided reference genes

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