Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 0.0e+00 1500.7 726 100.0
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 0.0e+00 1156.7 733 75.7
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 0.0e+00 1112.8 767 71.8
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 0.0e+00 1077.4 726 73.1
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.4e-309 1065.8 725 69.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.9e-302 1041.6 692 71.7
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 3.2e-301 1038.1 685 71.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.1e-300 1035.4 726 68.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.6e-300 1034.2 728 68.3
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 6.6e-299 1030.4 734 68.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 9.6e-298 1026.5 713 69.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.1e-297 1025.4 725 68.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 2.6e-295 1018.5 726 68.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 5.8e-295 1017.3 720 69.0
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.3e-294 1016.1 719 69.8
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.7e-294 1015.8 734 66.2
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.7e-292 1008.4 729 66.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.8e-291 1005.7 730 66.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.0e-291 1005.0 730 65.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 5.6e-290 1000.7 724 66.4
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.6e-290 1000.7 707 68.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 7.4e-290 1000.3 742 65.0
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.4e-288 996.1 731 66.9
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 6.9e-288 993.8 668 71.1
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 6.9e-288 993.8 726 66.4
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 6.9e-288 993.8 731 66.6
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 7.6e-287 990.3 618 74.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.3e-286 989.6 730 66.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.1e-285 986.5 717 66.9
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.6e-284 982.6 725 65.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 2.7e-284 981.9 708 66.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.5e-284 981.5 719 67.2
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.6e-284 981.1 722 67.0
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 6.0e-284 980.7 729 66.5
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.0e-283 979.9 723 67.1
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-282 976.5 732 66.1
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.5e-282 975.3 737 66.6
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 9.6e-282 973.4 688 67.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.8e-281 971.8 731 65.9
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 8.2e-281 970.3 724 66.0
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.6e-279 963.8 743 64.5
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.2e-278 962.2 728 64.0
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 2.2e-278 962.2 718 65.0
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 6.5e-278 960.7 716 65.8
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 3.2e-277 958.4 718 65.9
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.1e-277 957.2 757 63.3
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.6e-276 956.1 725 64.3
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.6e-276 954.5 686 67.2
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 6.1e-276 954.1 706 64.7
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.9e-276 953.7 722 63.9
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.3e-275 952.2 687 66.7
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.0e-275 951.8 686 67.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.5e-274 949.5 737 65.3
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.3e-274 948.3 706 64.4
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.3e-273 946.4 724 65.2
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.7e-273 944.9 591 77.3
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.8e-272 942.6 688 65.7
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.9e-272 940.6 691 65.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-271 939.9 723 62.8
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 2.6e-271 938.7 708 64.3
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.5e-270 934.1 713 63.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.4e-269 932.9 692 66.0
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.2e-268 929.9 725 62.1
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 8.8e-267 923.7 677 65.6
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.5e-266 922.9 719 63.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.8e-265 918.7 733 61.0
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 9.1e-264 913.7 734 60.4
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 3.4e-263 911.8 725 60.0
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.2e-262 909.1 676 65.1
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.5e-261 904.4 679 64.2
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 9.4e-261 903.7 687 63.9
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.7e-260 902.1 718 61.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.7e-260 902.1 678 64.5
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 7.9e-260 900.6 679 64.9
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.1e-258 896.7 720 60.7
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.0e-258 896.0 618 69.9
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.3e-257 893.3 633 68.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.8e-257 892.1 891 53.8
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 8.2e-257 890.6 592 72.5
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.6e-252 875.2 687 62.9
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.7e-249 865.1 742 58.8
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 4.1e-248 861.7 535 78.3
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 6.5e-246 854.4 688 60.9
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 8.5e-246 854.0 733 57.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.0e-240 834.3 692 57.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.0e-239 832.8 694 58.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.0e-236 820.8 777 55.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.3e-235 819.3 681 56.8
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.4e-234 815.1 687 59.1
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 7.5e-234 814.3 728 57.1
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.4e-232 810.1 693 56.6
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.4e-232 808.1 670 61.9
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 7.0e-232 807.7 730 54.0
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.6e-231 806.6 682 56.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.6e-231 806.6 678 55.8
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 5.9e-231 804.7 684 56.3
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 7.7e-231 804.3 685 56.6
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.9e-230 802.4 679 55.7
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 5.0e-230 801.6 690 56.1
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.1e-229 800.4 718 54.9
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.9e-229 799.7 738 53.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.2e-228 797.0 677 59.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-228 797.0 679 56.4
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-228 796.6 693 55.4
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-228 796.6 684 56.0
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.6e-228 796.6 684 56.0
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.0e-227 793.9 734 54.0
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.0e-227 792.3 673 56.3
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 3.0e-227 792.3 708 54.5
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 3.0e-227 792.3 690 59.4
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.4e-225 784.6 732 52.6
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-224 782.7 734 53.4
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 5.4e-224 781.6 682 59.4
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.6e-223 780.0 678 55.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.3e-221 771.9 699 53.4
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 9.5e-221 770.8 749 52.1
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-219 766.1 682 58.5
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.4e-216 756.9 685 57.4
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 3.2e-216 755.7 681 52.9
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.7e-214 750.0 681 53.6
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.8e-211 738.0 694 53.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.5e-210 736.9 560 64.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 5.8e-210 734.9 759 48.7
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.2e-207 727.2 652 55.2
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 8.1e-204 714.5 625 55.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.6e-199 698.7 745 49.4
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.5e-197 693.0 536 62.3
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.4e-194 682.6 699 48.8
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.2e-191 674.1 687 51.1
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 6.2e-188 661.8 723 49.4
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 5.4e-184 648.7 681 49.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.1e-160 571.2 544 53.1
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.6e-141 506.9 356 65.7
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 8.8e-134 481.9 386 59.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 9.7e-133 478.4 423 52.7
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.5e-125 454.5 406 57.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-122 444.9 297 68.7
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 6.5e-121 439.1 405 53.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 7.5e-117 425.6 214 91.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.3e-105 387.5 469 44.1
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 9.2e-99 365.5 366 47.8
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 3.0e-97 360.5 326 57.4
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.2e-90 338.6 569 35.3
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.9e-88 331.3 313 49.8
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 2.3e-86 324.3 546 34.6
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.2e-85 322.0 576 34.5
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.9e-65 253.8 253 54.5
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.3e-64 250.4 185 65.9
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.0e-61 241.5 205 59.0
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.1e-58 231.5 139 75.5
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 2.4e-54 218.0 286 48.3
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.8e-53 213.4 212 51.4
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 8.4e-52 209.5 180 59.4
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.0e-49 202.6 215 50.7
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.9e-48 198.4 223 47.1
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.8e-46 191.8 390 32.6
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.6e-45 188.0 131 62.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.4e-45 187.6 129 64.3
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-36 158.3 99 72.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-36 158.3 99 72.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-36 158.3 99 72.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 8.8e-33 146.4 135 51.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 3.1e-30 137.9 261 34.1
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 3.8e-28 131.0 242 35.1
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 5.0e-28 130.6 260 31.9
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 3.6e-26 124.4 130 50.0
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-25 122.5 146 43.8
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.9e-20 104.8 199 32.7
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-19 102.4 79 60.8
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-18 98.2 59 72.9
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 48 68.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 48 68.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 8.5e-12 76.6 54 66.7


User provided reference genes

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