Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 7.8e-276 953.4 547 100.0
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.0e-227 793.5 569 80.8
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.1e-212 742.7 585 78.3
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.1e-205 720.3 542 77.1
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 5.5e-205 718.0 575 76.3
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 8.8e-203 710.7 568 76.9
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 3.3e-202 708.8 548 76.3
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.2e-201 704.1 552 76.4
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.4e-200 702.6 571 75.8
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 1.6e-199 699.9 571 75.0
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 5.9e-199 698.0 580 72.1
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 1.6e-196 689.9 567 71.4
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 3.6e-196 688.7 574 75.3
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.4e-195 686.8 563 73.9
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 5.7e-194 681.4 563 73.5
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 2.9e-190 669.1 569 73.3
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.9e-189 666.4 570 71.1
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.2e-189 665.6 572 73.4
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 9.4e-189 664.1 554 72.0
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 4.7e-188 661.8 571 70.9
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 7.5e-186 654.4 600 65.2
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.7e-185 653.3 569 69.6
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 4.1e-184 648.7 573 72.6
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 4.1e-184 648.7 458 84.1
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 4.1e-184 648.7 556 73.4
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 4.1e-184 648.7 538 74.2
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.2e-183 647.1 555 71.4
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.6e-183 646.7 570 70.5
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 7.7e-183 644.4 554 70.8
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.9e-181 639.8 559 69.1
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.1e-180 636.3 583 69.0
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 6.1e-180 634.8 543 72.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 4.0e-179 632.1 535 74.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 5.2e-179 631.7 526 74.1
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.5e-178 630.2 526 74.0
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 2.0e-178 629.8 576 70.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 2.0e-178 629.8 530 71.9
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 7.5e-178 627.9 568 69.5
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.3e-177 627.1 563 70.9
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.7e-177 626.7 522 74.7
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 6.3e-177 624.8 547 71.3
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.4e-176 622.9 563 70.7
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 7.0e-176 621.3 505 71.9
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.2e-175 620.5 675 60.4
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 5.9e-175 618.2 561 67.6
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.7e-174 616.7 508 75.4
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 2.3e-174 616.3 568 69.5
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 8.6e-174 614.4 529 73.5
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.5e-173 613.6 540 72.0
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 1.9e-173 613.2 586 64.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 4.4e-170 602.1 519 69.0
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 5.7e-170 601.7 491 71.7
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 5.4e-168 595.1 532 69.9
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 7.8e-167 591.3 581 63.2
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.8e-167 591.3 576 67.5
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.7e-166 590.1 531 70.6
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 2.3e-166 589.7 536 63.1
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.8e-164 582.8 526 68.1
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 4.7e-164 582.0 549 67.2
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 5.8e-162 575.1 484 74.2
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.8e-162 575.1 519 63.2
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 2.9e-161 572.8 585 63.2
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 6.4e-161 571.6 566 60.8
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.3e-158 563.1 489 72.0
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.3e-158 563.1 586 60.2
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 7.3e-157 558.1 535 65.8
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 2.8e-156 556.2 568 65.3
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 2.3e-155 553.1 388 83.8
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 5.2e-155 552.0 499 70.5
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.5e-154 550.4 502 69.7
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 2.4e-152 543.1 573 64.7
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 4.1e-152 542.3 550 58.4
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 8.6e-150 534.6 503 68.0
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.8e-148 529.6 556 59.2
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.4e-147 527.3 573 63.2
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.4e-147 527.3 436 74.5
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.0e-146 523.5 461 68.3
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 3.8e-145 519.2 547 56.7
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.2e-144 516.2 552 62.5
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 9.2e-144 514.6 556 57.6
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 6.0e-143 511.9 554 59.2
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.1e-141 507.7 548 58.0
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.5e-141 507.3 554 56.3
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.9e-141 506.9 539 59.0
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.1e-136 491.1 430 72.8
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.1e-135 486.9 378 77.0
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 3.0e-134 483.0 557 59.8
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.9e-133 480.3 534 62.9
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.1e-131 474.6 552 59.1
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.0e-130 470.3 477 60.0
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.9e-129 466.5 382 69.4
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 9.3e-128 461.5 351 85.5
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.0e-126 458.0 560 56.8
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 3.0e-126 456.4 549 59.2
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.3e-125 453.0 431 68.4
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 3.1e-123 446.4 550 57.1
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.2e-122 444.5 554 57.9
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.7e-121 440.7 551 55.0
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 2.2e-121 440.3 551 55.0
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 2.2e-121 440.3 551 55.0
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 3.8e-121 439.5 550 56.0
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 4.6e-119 432.6 501 58.7
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 3.4e-106 389.8 217 95.4
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.4e-99 367.1 480 57.7
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.2e-84 317.4 202 82.7
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.1e-83 315.1 231 70.1
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 9.4e-80 302.0 223 74.0
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 4.5e-66 256.5 247 57.1
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 3.6e-63 246.9 247 56.7
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 4.7e-63 246.5 223 59.6
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.0e-62 245.4 225 58.2
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 5.2e-62 243.0 234 57.7
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 7.0e-59 232.6 278 49.3
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 7.0e-59 232.6 323 44.6
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.4e-54 218.4 168 69.6
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 2.0e-53 214.5 317 43.5
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 5.4e-51 206.5 174 68.4
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 5.0e-49 199.9 149 79.9
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 1.2e-45 188.7 247 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.3e-41 174.5 203 46.3
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 8.6e-41 172.6 271 42.1
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.1e-38 165.6 205 44.4
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 3.1e-38 164.1 273 40.3
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.0e-37 161.4 182 57.7
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 2.1e-34 151.4 194 48.5
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 4.3e-32 143.7 105 72.4
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 9.5e-32 142.5 151 51.0
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.2e-31 142.1 138 63.0
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 5.2e-30 136.7 103 75.7
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.6e-26 125.2 100 75.0
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 3.9e-25 120.6 113 60.2
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 6.2e-23 113.2 69 84.1
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.4e-19 102.1 109 60.6
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.2e-18 99.0 97 54.6
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 4.6e-18 97.1 133 47.4
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 2.3e-17 94.7 119 58.0
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 3.9e-17 94.0 183 43.2
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 2.5e-16 91.3 154 41.6
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 3.3e-16 90.9 75 68.0
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.8e-14 85.1 85 58.8
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.9e-14 83.2 74 66.2
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 7.6e-13 79.7 69 56.5
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 7.6e-13 79.7 250 32.8
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 2.2e-12 78.2 68 72.1
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.9e-12 77.8 69 62.3
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 8.4e-12 76.3 115 44.3
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.1e-11 75.9 69 73.9
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 2.4e-11 74.7 46 76.1
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 1.2e-10 72.4 103 47.6
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.6e-10 72.0 46 78.3
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 3.5e-10 70.9 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 3.5e-10 70.9 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 3.5e-10 70.9 39 87.2
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 6.0e-10 70.1 40 85.0
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 6.0e-10 70.1 42 78.6
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 3.0e-09 67.8 43 74.4
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.1e-09 67.0 59 54.2
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 5.1e-09 67.0 112 42.9
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 6.7e-09 66.6 110 68.2
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 1.1e-08 65.9 201 32.8
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.9e-08 65.1 254 28.0
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 9.6e-08 62.8 54 64.8
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 2.8e-07 61.2 58 62.1
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 3.7e-07 60.8 50 74.0
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 1.4e-06 58.9 39 82.1
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 1.4e-06 58.9 39 82.1
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 1.4e-06 58.9 39 82.1
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-06 58.9 62 54.8
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 5.3e-06 57.0 100 40.0


User provided reference genes

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