Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07459 Davidia involucrata HOM05D003602 ORTHO05D004808 4.5e-269 930.6 457 100.0
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 7.5e-30 136.0 73 89.0
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 5.9e-27 126.3 71 83.1
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.2e-26 124.4 73 82.2
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 1.9e-25 121.3 73 76.7
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 2.5e-25 120.9 73 78.1
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 2.1e-24 117.9 73 75.3
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 3.6e-24 117.1 73 76.7
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 3.6e-24 117.1 73 78.1
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 3.0e-23 114.0 143 48.3
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 4.0e-23 113.6 75 66.7
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 6.8e-23 112.8 73 74.0
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 6.8e-23 112.8 73 74.0
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 1.5e-22 111.7 73 71.2
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 2.0e-22 111.3 73 71.2
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.0e-22 111.3 73 72.6
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 2.6e-22 110.9 75 68.0
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.6e-22 110.9 82 67.1
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 2.6e-22 110.9 69 72.5
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 3.4e-22 110.5 71 71.8
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 3.4e-22 110.5 75 68.0
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 4.4e-22 110.2 73 76.7
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 4.4e-22 110.2 75 68.0
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 7.5e-22 109.4 75 65.3
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 7.5e-22 109.4 73 74.0
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 1.3e-21 108.6 73 69.9
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 2.2e-21 107.8 73 65.8
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 3.7e-21 107.1 73 68.5
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-21 107.1 73 68.5
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-21 107.1 73 68.5
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-21 107.1 73 68.5
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.7e-21 107.1 73 68.5
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 3.7e-21 107.1 70 70.0
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 4.8e-21 106.7 143 45.5
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 6.3e-21 106.3 100 55.0
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 6.3e-21 106.3 73 68.5
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 6.3e-21 106.3 70 71.4
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 8.3e-21 105.9 71 70.4
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 1.1e-20 105.5 70 65.7
Dinv02401 Davidia involucrata HOM05D014564 ORTHO05D180449 1.1e-20 105.5 89 71.9
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 1.1e-20 105.5 73 64.4
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 1.1e-20 105.5 75 64.0
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.4e-20 105.1 75 65.3
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.4e-20 105.1 73 67.1
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.4e-20 105.1 73 67.1
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 1.4e-20 105.1 75 64.0
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 1.4e-20 105.1 75 64.0
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 1.4e-20 105.1 75 64.0
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 1.8e-20 104.8 88 58.0
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 1.8e-20 104.8 88 58.0
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 2.4e-20 104.4 75 61.3
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 2.4e-20 104.4 75 66.7
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 2.4e-20 104.4 70 65.7
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 3.1e-20 104.0 75 62.7
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 3.1e-20 104.0 75 65.3
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 3.1e-20 104.0 75 61.3
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 4.1e-20 103.6 75 64.0
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 5.4e-20 103.2 75 65.3
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 5.4e-20 103.2 75 65.3
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 5.4e-20 103.2 88 56.8
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 5.4e-20 103.2 75 64.0
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 5.4e-20 103.2 73 63.0
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 5.4e-20 103.2 73 63.0
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 7.0e-20 102.8 75 61.3
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.2e-19 102.1 75 62.7
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 1.2e-19 102.1 75 64.0
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 1.2e-19 102.1 73 63.0
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.2e-19 102.1 75 62.7
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.6e-19 101.7 114 46.5
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 1.6e-19 101.7 75 61.3
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 2.0e-19 101.3 75 65.3
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 2.7e-19 100.9 72 62.5
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 3.5e-19 100.5 75 64.0
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 3.5e-19 100.5 75 62.7
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 3.5e-19 100.5 70 67.1
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 5.9e-19 99.8 75 62.7
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 5.9e-19 99.8 74 68.9
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 5.9e-19 99.8 75 62.7
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 7.7e-19 99.4 75 62.7
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 1.3e-18 98.6 76 64.5
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 1.3e-18 98.6 88 53.4
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 1.3e-18 98.6 75 61.3
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.7e-18 98.2 75 57.3
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.7e-18 98.2 75 61.3
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 1.7e-18 98.2 75 61.3
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 2.3e-18 97.8 76 61.8
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 2.3e-18 97.8 75 61.3
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 2.3e-18 97.8 98 51.0
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 2.9e-18 97.4 71 60.6
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 2.9e-18 97.4 75 61.3
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 2.9e-18 97.4 171 39.2
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 3.8e-18 97.1 97 51.5
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 3.8e-18 97.1 75 61.3
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 5.0e-18 96.7 88 53.4
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 8.6e-18 95.9 75 60.0
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.1e-17 95.5 76 61.8
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.1e-17 95.5 75 57.3
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.1e-17 95.5 75 57.3
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 1.5e-17 95.1 75 57.3
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 1.5e-17 95.1 75 58.7
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 1.9e-17 94.7 82 59.8
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 1.9e-17 94.7 75 58.7
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 1.9e-17 94.7 75 60.0
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 1.9e-17 94.7 72 63.9
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 3.3e-17 94.0 75 58.7
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 3.3e-17 94.0 75 58.7
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 4.2e-17 93.6 77 54.5
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 5.5e-17 93.2 88 48.9
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 9.5e-17 92.4 69 62.3
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 9.5e-17 92.4 69 62.3
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.2e-16 92.0 70 61.4
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 1.2e-16 92.0 70 61.4
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 1.6e-16 91.7 109 45.9
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 1.6e-16 91.7 75 54.7
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 2.1e-16 91.3 91 45.1
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 2.1e-16 91.3 70 58.6
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 2.8e-16 90.9 75 57.3
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 4.7e-16 90.1 70 60.0
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 4.7e-16 90.1 71 54.9
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 8.0e-16 89.4 82 58.5
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 1.0e-15 89.0 72 61.1
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 1.0e-15 89.0 88 46.6
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 4.0e-15 87.0 71 60.6
Dinv13493 Davidia involucrata HOM05D019947 ORTHO05D182740 1.2e-14 85.5 116 57.8
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.0e-14 84.7 75 49.3
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 4.9e-13 80.1 54 61.1
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 2.4e-12 77.8 83 49.4
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 2.4e-12 77.8 75 41.3
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.0e-11 74.7 55 58.2
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 2.0e-11 74.7 88 38.6
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 2.7e-11 74.3 78 46.2
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 2.7e-11 74.3 51 58.8
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 3.5e-11 73.9 40 82.5
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 1.0e-10 72.4 71 45.1
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.3e-10 72.0 88 40.9
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 5.0e-10 70.1 48 66.7
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 5.0e-10 70.1 64 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.5e-09 68.6 88 38.6
Dinv22004 Davidia involucrata HOM05D060656 ORTHO05D180970 1.5e-09 68.6 38 76.3
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.5e-09 68.6 65 47.7
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 1.5e-09 68.6 64 45.3
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 3.3e-09 67.4 64 45.3
Dinv15402 Davidia involucrata HOM05D014564 ORTHO05D180445 4.3e-09 67.0 49 81.6
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 4.3e-09 67.0 104 38.5
Dinv05633 Davidia involucrata HOM05D014564 ORTHO05D183896 7.3e-09 66.2 47 78.7
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.2e-08 65.5 64 51.6
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.6e-08 65.1 96 43.8
Dinv34711 Davidia involucrata HOM05D025281 ORTHO05D179746 3.6e-08 63.9 174 36.8
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 4.7e-08 63.5 92 35.9
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 1.8e-07 61.6 80 40.0
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 1.5e-06 58.5 70 38.6
Dinv22002 Davidia involucrata HOM05D060656 ORTHO05D184223 4.4e-06 57.0 128 38.3
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 7.5e-06 56.2 40 70.0
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 9.8e-06 55.8 58 44.8
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 9.8e-06 55.8 75 37.3


User provided reference genes

Program Settings