Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 3170.9 1770 100.0
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 3170.9 1770 100.0
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1568.1 1630 58.6
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1526.5 1727 55.7
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1500.3 1711 55.8
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1496.1 1725 54.2
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1467.2 1870 52.1
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 0.0e+00 1443.7 1822 50.7
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1442.9 1708 54.7
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1397.5 1722 50.8
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 1390.9 1711 51.5
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 0.0e+00 1374.0 2102 45.2
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1317.4 1722 50.5
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 1305.4 1749 49.7
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1271.5 1745 48.6
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1250.3 1754 47.6
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 1246.9 1748 47.7
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 1237.2 1769 47.4
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1233.4 1706 48.4
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 1220.7 1734 47.0
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 0.0e+00 1186.0 1805 44.5
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1184.1 1708 46.1
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 0.0e+00 1167.5 1714 48.0
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 0.0e+00 1160.2 1709 45.6
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1141.7 725 100.0
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 0.0e+00 1113.6 1776 43.8
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 0.0e+00 1089.3 1717 43.4
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 0.0e+00 1082.8 1769 45.6
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 5.6e-307 1058.5 1848 43.8
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 9.5e-307 1057.7 1781 42.1
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 3.0e-300 1036.2 1846 40.8
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 4.3e-299 1032.3 1714 43.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.8e-297 1026.9 1721 42.8
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 1.5e-296 1023.8 1242 52.2
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 9.8e-296 1021.1 1695 43.1
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 3.2e-294 1016.1 1712 43.1
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.3e-292 1010.7 1760 41.8
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.7e-292 1010.4 1695 42.2
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.1e-290 1003.4 1657 42.3
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 4.7e-290 1002.3 1739 43.3
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.1e-289 1001.1 1838 40.6
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.7e-287 993.8 1692 42.0
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 8.3e-287 991.5 1706 42.2
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 4.1e-286 989.2 1689 42.1
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 2.5e-283 979.9 1710 42.2
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.3e-283 979.5 1771 41.2
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 1.2e-280 971.1 1710 41.5
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 1.2e-280 971.1 1846 39.5
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 6.4e-279 965.3 1703 41.5
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 2.1e-274 950.3 1704 41.5
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 4.7e-274 949.1 1813 38.7
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 5.8e-272 942.2 1666 40.6
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.9e-270 937.2 1774 38.7
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.7e-269 933.3 1807 38.5
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 3.5e-269 932.9 1765 40.9
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.5e-267 927.5 1722 39.4
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 8.1e-266 921.8 1751 39.9
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 6.9e-265 918.7 1693 41.8
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 4.9e-263 912.5 1766 38.4
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.1e-262 911.4 1771 39.1
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 4.2e-262 909.4 1752 39.7
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 9.3e-262 908.3 1788 38.6
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.2e-261 907.9 1758 40.7
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 2.7e-261 906.7 1725 40.9
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.3e-260 903.7 1726 39.5
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.9e-259 900.6 1719 40.1
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 2.5e-259 900.2 1684 40.7
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.1e-257 894.8 1713 40.3
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 3.1e-257 893.3 1681 39.9
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 1.1e-251 874.8 1692 39.1
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.7e-247 860.9 1661 40.5
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 2.2e-247 860.5 1692 40.8
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 8.2e-242 842.0 1151 46.7
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 4.5e-240 836.3 1755 36.6
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 5.5e-238 829.3 1752 36.7
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.3e-236 823.9 1583 40.4
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 7.2e-230 802.4 1697 37.3
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.1e-217 761.9 1706 36.2
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 1.5e-203 714.9 1487 39.1
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 2.2e-202 711.1 935 45.9
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 2.0e-184 651.4 1448 37.8
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.4e-180 638.6 918 46.6
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 6.8e-180 636.3 1669 33.5
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 4.4e-179 633.6 1007 46.2
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.2e-176 625.5 1655 32.9
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-167 595.1 765 46.9
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 5.2e-164 583.6 1415 35.1
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 5.2e-164 583.6 1415 35.1
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 3.5e-160 570.9 1790 30.9
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.8e-157 561.2 801 45.1
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 9.9e-155 552.7 936 42.8
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 9.3e-145 519.6 915 46.1
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.9e-136 490.0 866 42.8
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 6.2e-133 480.3 874 39.8
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 3.9e-119 434.5 863 41.3
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.7e-112 411.8 443 48.3
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 6.1e-112 410.6 1042 31.7
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.9e-111 407.9 498 52.2
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 2.0e-107 395.6 667 46.5
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 6.7e-103 380.6 917 38.5
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 4.0e-95 354.8 642 39.1
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 7.0e-92 344.0 613 37.8
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 5.0e-90 337.8 656 41.3
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 3.4e-86 325.1 1117 27.9
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 9.8e-86 323.6 817 36.2
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.7e-80 304.7 471 39.3
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 2.2e-77 295.8 794 34.4
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.9e-77 294.7 1029 31.1
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.0e-71 276.9 428 44.6
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.2e-67 263.5 1203 25.6
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 4.6e-67 261.5 1739 25.1
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.7e-66 259.6 167 77.2
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.7e-66 259.6 194 69.6
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 2.6e-62 245.7 284 56.3
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.1e-60 240.4 234 53.8
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 8.6e-58 230.7 242 50.4
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.3e-55 222.6 197 59.9
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.2e-54 220.3 236 45.3
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 7.1e-52 211.1 685 36.8
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-49 203.4 652 33.4
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.2e-48 200.3 142 74.6
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.1e-47 197.2 235 50.6
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.1e-47 195.7 146 65.1
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 4.0e-47 195.3 186 53.8
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 6.8e-47 194.5 334 42.8
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 5.1e-42 178.3 197 50.8
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.1e-36 160.6 94 78.7
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.0e-34 152.5 1005 28.3
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 3.9e-34 152.1 132 60.6
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 4.5e-30 138.7 140 47.1
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.2e-28 132.1 219 39.3
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 5.4e-28 131.7 177 42.9
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 4.3e-25 122.1 80 68.8
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.2e-21 109.8 897 26.1
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 8.4e-21 107.8 115 57.4
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 7.1e-20 104.8 127 44.1
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 5.1e-18 98.6 301 34.6
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.7e-17 95.1 81 56.8
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 7.4e-17 94.7 68 63.2
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.7e-16 92.4 317 26.8
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 8.2e-16 91.3 81 55.6
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.9e-15 88.2 63 63.5
Cpa.g.sc119.17 Carica papaya HOM05D004493 ORTHO05D005117 7.6e-14 84.7 305 32.5
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.4e-12 80.5 317 33.4
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-12 80.1 58 63.8
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 4.6e-11 75.5 243 34.6
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.9e-10 72.4 213 27.7
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 1.9e-09 70.1 150 32.7
Lj3A600G13 Lonicera japonica HOM05D061108 ORTHO05D005117 2.5e-09 69.7 193 34.7
Lju414A0G22 Lonicera japonica HOM05D061108 ORTHO05D005117 2.5e-09 69.7 193 34.7
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 3.3e-09 69.3 70 52.9
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.3e-08 67.4 60 51.7
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 1.5e-06 60.5 65 53.8
SalBow3G1183 Salvia bowleyana HOM05D004493 ORTHO05D005117 7.7e-06 58.2 132 29.5


User provided reference genes

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