Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04117 Davidia involucrata HOM05D003084 ORTHO05D003580 2.0e-116 422.5 230 100.0
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 2.4e-85 319.3 272 69.5
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 3.1e-85 318.9 273 69.2
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 3.6e-81 305.4 282 66.0
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.5e-79 300.1 280 64.3
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 9.1e-77 290.8 277 63.2
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.3e-75 287.0 275 64.0
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 6.5e-75 284.6 270 63.0
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.2e-74 282.3 279 62.7
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 9.4e-74 280.8 242 64.0
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.2e-73 280.4 242 64.0
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 5.2e-72 275.0 278 60.4
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 9.1e-69 264.2 275 62.2
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 3.5e-68 262.3 274 60.9
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 5.9e-68 261.5 227 64.3
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 5.5e-66 255.0 277 57.4
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 5.5e-66 255.0 276 55.8
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 7.2e-66 254.6 268 56.0
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 9.5e-66 254.2 277 57.4
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 6.1e-65 251.5 273 57.5
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.0e-64 250.8 273 57.9
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 4.0e-64 248.8 272 57.7
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.0e-64 248.8 279 55.2
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 8.9e-64 247.7 274 55.8
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 2.6e-63 246.1 271 57.6
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 2.6e-63 246.1 270 57.4
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 3.4e-63 245.7 271 57.9
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 3.4e-63 245.7 199 64.8
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 5.7e-63 245.0 284 57.0
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 7.5e-63 244.6 271 57.9
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 9.8e-63 244.2 272 57.7
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 1.3e-62 243.8 267 58.4
CSS0033238 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.7e-62 243.4 162 76.5
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.7e-62 243.4 275 57.1
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 2.2e-62 243.0 271 58.3
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 2.2e-62 243.0 271 58.3
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 2.2e-62 243.0 272 57.4
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 2.2e-62 243.0 272 57.4
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 3.7e-62 242.3 271 57.2
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 3.7e-62 242.3 285 56.1
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 6.3e-62 241.5 271 57.6
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 6.3e-62 241.5 268 53.7
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 8.3e-62 241.1 283 54.8
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.1e-61 240.7 273 56.0
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.1e-61 240.7 273 56.0
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 2.4e-61 239.6 270 57.0
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 2.4e-61 239.6 270 55.9
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 5.4e-61 238.4 275 55.6
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 9.2e-61 237.7 278 55.4
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.2e-60 237.3 287 55.7
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.2e-60 237.3 268 53.4
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 2.0e-60 236.5 240 57.1
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 2.7e-60 236.1 268 53.0
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 4.5e-60 235.3 257 59.1
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 7.8e-60 234.6 273 55.3
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 1.0e-59 234.2 271 56.5
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 2.3e-59 233.0 271 56.1
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.9e-59 232.3 275 56.4
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.9e-59 232.3 275 56.4
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 1.5e-58 230.3 272 55.9
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.3e-58 229.2 269 55.8
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 3.6e-57 225.7 269 54.3
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 4.7e-57 225.3 272 53.7
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 6.1e-57 224.9 267 49.8
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 8.0e-57 224.6 271 52.4
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.8e-56 223.4 268 49.3
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 5.2e-56 221.9 273 53.5
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 2.0e-55 219.9 270 52.6
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.4e-55 219.2 246 52.8
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 5.8e-55 218.4 269 49.4
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-55 218.0 270 48.5
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-55 218.0 269 46.8
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 7.5e-55 218.0 275 53.1
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 9.8e-55 217.6 274 52.6
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.3e-54 217.2 266 55.3
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 2.2e-54 216.5 271 53.5
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.7e-54 215.7 249 51.8
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 6.4e-54 214.9 265 52.1
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 2.4e-53 213.0 268 54.5
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 3.2e-53 212.6 261 54.4
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 4.1e-53 212.2 247 51.4
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 7.0e-53 211.5 284 50.0
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 4.6e-52 208.8 277 50.2
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 6.0e-52 208.4 243 52.7
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 6.0e-52 208.4 243 52.7
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 1.0e-51 207.6 263 51.7
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.7e-51 206.8 266 51.1
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 3.0e-51 206.1 266 54.5
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 3.9e-51 205.7 233 51.9
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 8.6e-51 204.5 231 51.1
CSS0000201 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.5e-50 203.8 155 70.3
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.5e-50 203.8 231 50.6
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 4.3e-50 202.2 232 50.9
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 9.5e-50 201.1 237 49.8
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 9.5e-50 201.1 257 51.4
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 9.5e-50 201.1 232 50.4
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 3.6e-49 199.1 279 46.6
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 4.7e-49 198.7 280 48.6
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.8e-48 196.8 288 46.2
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 2.3e-48 196.4 277 45.8
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 4.0e-48 195.7 256 48.8
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 6.8e-48 194.9 275 46.2
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 6.8e-48 194.9 274 46.7
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 8.9e-48 194.5 274 46.7
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.2e-47 194.1 277 46.2
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 1.5e-47 193.7 288 47.9
BcaB04g19962 Brassica carinata HOM05D003084 ORTHO05D003580 3.4e-47 192.6 275 46.2
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 3.4e-47 192.6 279 44.8
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 9.8e-47 191.0 283 46.6
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 9.8e-47 191.0 270 48.1
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 9.8e-47 191.0 276 46.4
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.3e-46 190.7 289 48.8
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 1.7e-46 190.3 288 47.6
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 4.9e-46 188.7 284 42.3
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.1e-45 187.6 287 42.9
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 1.4e-45 187.2 226 50.4
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 1.4e-45 187.2 226 50.4
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 4.1e-45 185.7 284 43.0
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 5.4e-45 185.3 271 45.4
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 7.0e-45 184.9 289 46.0
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 6.2e-41 171.8 225 52.9
Actinidia38788 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.5e-39 167.2 159 59.7
Sc25g0002420 Simmondsia chinensis HOM05D003084 ORTHO05D003580 8.3e-38 161.4 254 44.9
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.7e-35 153.7 159 55.3
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 1.1e-34 151.0 264 42.8
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.1e-34 151.0 275 42.9
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 1.9e-34 150.2 165 54.5
Os02g0147300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.5e-34 149.8 174 50.0
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.3e-34 149.1 278 43.2
C03p62010 Brassica napus HOM05D003084 ORTHO05D003580 5.6e-34 148.7 164 54.3
Rhsim04G0090100 Rhododendron simsii HOM05D003084 ORTHO05D003580 5.6e-34 148.7 194 49.0
FvH4_4g00110 Fragaria vesca HOM05D003084 ORTHO05D003580 2.1e-33 146.7 120 57.5
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 3.6e-33 146.0 268 45.9
Rhsim04G0095500 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.1e-32 144.4 195 46.2
Rhsim04G0092700 Rhododendron simsii HOM05D003084 ORTHO05D003580 5.2e-32 142.1 166 51.8
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 8.9e-32 141.4 253 42.3
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 3.4e-31 139.4 264 42.0
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.8e-31 138.7 192 46.9
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea HOM05D003084 ORTHO05D003580 1.7e-27 127.1 103 65.0
Oeu052036.1 Olea europaea HOM05D003084 ORTHO05D003580 2.5e-26 123.2 107 56.1
RhsimUnG0029100 Rhododendron simsii HOM05D003084 ORTHO05D003580 9.0e-24 114.8 168 44.0
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.0e-23 113.6 166 43.4
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 6.4e-22 108.6 109 53.2
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 3.2e-21 106.3 138 44.9
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 3.2e-21 106.3 148 43.2
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 3.2e-21 106.3 148 43.2
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.6e-20 102.4 257 35.0
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.9e-10 70.5 194 34.5
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.4e-08 64.3 172 30.8
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 5.3e-08 62.4 58 79.3
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 5.3e-08 62.4 58 79.3
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 5.8e-07 58.9 130 33.1
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.2e-06 57.0 140 35.0


User provided reference genes

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