Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.4e-160 568.5 346 100.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 8.5e-119 431.0 279 86.4
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 9.4e-118 427.6 268 83.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 9.7e-115 417.5 272 79.0
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.6e-112 409.5 341 66.0
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.1e-110 404.1 260 78.1
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 9.4e-110 401.0 275 78.5
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.2e-109 400.6 264 78.0
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.4e-108 397.1 267 73.8
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 1.8e-108 396.7 284 75.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 9.7e-107 391.0 269 76.2
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 5.3e-105 385.2 266 75.6
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 7.0e-105 384.8 266 73.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 3.5e-104 382.5 265 73.6
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 3.8e-103 379.0 261 74.7
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 6.5e-103 378.3 263 72.6
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 8.5e-103 377.9 274 74.1
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 4.2e-102 375.6 274 70.8
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 7.2e-102 374.8 269 72.9
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 9.4e-102 374.4 273 70.0
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 2.1e-101 373.2 263 73.0
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.1e-101 373.2 268 72.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.7e-101 372.9 266 72.9
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 6.1e-101 371.7 268 72.0
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 6.1e-101 371.7 253 74.3
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.0e-100 369.4 268 70.5
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.0e-100 369.4 267 71.5
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.2e-100 368.6 267 72.3
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 6.8e-100 368.2 258 72.1
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.5e-99 367.1 269 71.7
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.6e-99 366.3 245 75.5
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 4.4e-99 365.5 275 72.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 7.5e-99 364.8 271 69.7
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.2e-98 363.2 260 73.8
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 2.2e-98 363.2 291 66.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.2e-98 363.2 235 76.6
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.3e-98 361.7 262 72.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 8.3e-98 361.3 319 61.4
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 8.3e-98 361.3 259 72.2
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.1e-97 360.9 254 72.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.8e-97 360.1 277 66.1
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 3.1e-97 359.4 262 71.8
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 5.4e-97 358.6 257 71.6
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 5.4e-97 358.6 245 76.3
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 5.4e-97 358.6 253 72.3
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 5.4e-97 358.6 246 73.6
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 9.1e-97 357.8 270 69.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.6e-96 357.1 277 69.0
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 3.5e-96 355.9 264 69.7
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 7.7e-96 354.8 257 72.0
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.7e-95 353.6 263 70.3
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 6.6e-95 351.7 265 69.8
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 6.6e-95 351.7 274 66.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.5e-94 350.5 277 69.3
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.3e-94 349.4 263 70.7
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.2e-94 349.0 227 78.0
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 7.2e-94 348.2 227 77.5
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 7.2e-94 348.2 268 69.8
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.8e-93 346.3 274 67.5
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.4e-92 344.0 248 74.2
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.4e-92 344.0 265 70.6
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.4e-92 344.0 271 66.4
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.8e-92 343.6 226 75.2
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 8.9e-92 341.3 269 69.5
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.0e-91 340.1 264 66.7
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.1e-89 334.3 253 66.0
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.8e-89 333.6 261 67.8
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 4.5e-88 328.9 269 63.9
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 6.6e-87 325.1 234 71.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 4.3e-86 322.4 250 65.2
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 5.6e-86 322.0 270 64.8
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 9.5e-86 321.2 232 69.4
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 9.5e-86 321.2 230 70.9
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.6e-85 320.5 260 63.1
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.1e-85 320.1 203 75.9
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 2.8e-85 319.7 215 74.4
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.7e-85 318.9 262 64.9
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 8.0e-85 318.2 218 72.0
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 8.0e-85 318.2 258 66.3
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 4.0e-84 315.8 249 66.7
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 5.2e-84 315.5 237 66.7
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 6.8e-84 315.1 220 71.8
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.8e-83 312.0 221 71.9
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.7e-82 310.5 188 80.3
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.7e-82 309.3 227 68.7
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.9e-82 308.9 268 63.4
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.4e-81 307.4 268 63.1
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.9e-81 307.0 269 62.5
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.4e-81 306.6 199 77.9
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 4.1e-81 305.8 199 74.4
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 5.4e-81 305.4 271 61.6
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 4.6e-80 302.4 267 62.9
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.0e-79 301.2 259 63.7
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.3e-79 300.8 259 63.7
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.3e-79 300.1 259 63.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 8.6e-79 298.1 259 62.5
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 8.6e-79 298.1 259 62.5
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 7.3e-78 295.0 223 67.7
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 7.3e-78 295.0 223 67.7
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 3.6e-77 292.7 231 67.5
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.7e-77 292.4 220 67.7
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 6.2e-77 292.0 218 69.3
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.1e-76 291.2 225 67.6
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.2e-76 288.9 258 62.0
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 4.4e-75 285.8 210 68.6
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 7.5e-75 285.0 249 61.8
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 9.2e-73 278.1 195 68.2
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 7.3e-70 268.5 191 67.5
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.7e-66 257.3 255 58.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.9e-63 246.1 237 54.0
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 5.8e-59 232.3 269 50.9
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 2.2e-58 230.3 139 84.2
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.8e-58 229.6 248 49.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.2e-56 224.6 237 48.5
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.0e-55 219.9 262 49.2
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 9.0e-52 208.4 315 46.7
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.6e-48 197.6 227 47.6
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 3.3e-46 189.9 124 70.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.4e-42 175.3 143 65.0
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.0e-39 168.3 119 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.6e-37 161.0 203 43.3
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 9.9e-35 151.8 96 79.2
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.3e-34 151.4 94 80.9
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 7.1e-33 145.6 177 41.8
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.0e-31 140.2 257 35.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-27 127.5 264 31.1
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.5e-22 111.3 196 32.7
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.9e-22 110.9 69 81.2
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 6.9e-20 102.4 111 47.7
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.2e-19 101.7 120 50.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.7e-13 81.3 142 40.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.2e-13 80.9 62 71.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.9e-11 72.8 238 26.9
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.4e-09 68.2 184 26.6
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 8.8e-07 58.9 53 62.3


User provided reference genes

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