Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.5e-247 859.0 421 100.0
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.7e-206 722.6 417 85.6
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.4e-184 649.8 417 75.8
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 5.4e-184 647.9 417 75.5
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.2e-183 646.7 417 74.6
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 5.9e-183 644.4 407 76.2
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.5e-181 639.0 407 75.7
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 7.3e-181 637.5 407 75.4
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 7.3e-181 637.5 407 75.7
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.2e-178 630.2 407 73.7
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.7e-177 626.3 407 72.5
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 3.7e-177 625.2 417 71.7
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 4.9e-177 624.8 407 72.7
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.4e-176 622.5 407 72.2
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 7.0e-176 620.9 407 72.2
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 8.6e-174 614.0 407 71.7
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.1e-173 613.6 416 70.0
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.5e-173 612.5 417 70.7
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 3.3e-173 612.1 407 70.8
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 5.6e-173 611.3 407 71.3
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.6e-173 611.3 407 71.3
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.1e-172 609.4 407 72.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.1e-172 609.4 407 72.0
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.1e-172 609.4 407 72.0
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.8e-172 609.0 407 71.5
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.6e-172 608.6 413 70.7
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 3.6e-172 608.6 417 71.0
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.2e-172 607.8 407 71.0
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.1e-171 607.1 407 71.5
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.8e-171 606.3 407 71.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.8e-171 606.3 407 70.8
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 3.1e-171 605.5 416 69.5
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 8.9e-171 604.0 407 71.7
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 1.5e-170 603.2 407 70.5
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.0e-170 602.8 407 70.5
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.4e-170 602.1 407 70.3
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.3e-169 600.1 413 69.7
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.7e-169 598.6 406 70.4
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.7e-169 598.6 407 69.5
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 6.4e-169 597.8 416 67.8
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.4e-168 596.7 417 70.5
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 3.2e-168 595.5 417 69.1
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.1e-168 595.1 407 70.8
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 5.4e-168 594.7 407 70.5
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 1.6e-167 593.2 413 68.5
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.6e-167 593.2 407 70.3
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 2.1e-167 592.8 417 68.6
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.7e-167 592.4 407 69.5
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 6.0e-167 591.3 416 67.1
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 7.8e-167 590.9 406 69.2
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 7.8e-167 590.9 407 69.8
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.0e-166 590.5 413 68.0
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.7e-166 589.7 416 67.5
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.0e-166 589.0 416 68.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.9e-166 588.6 416 67.8
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.6e-166 587.8 407 69.5
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.1e-165 587.0 392 71.7
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.5e-165 586.6 408 69.4
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 4.3e-165 585.1 417 68.6
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 4.3e-165 585.1 407 68.6
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 1.6e-164 583.2 407 68.8
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.6e-164 582.0 417 67.6
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 6.2e-164 581.3 417 66.7
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 8.1e-164 580.9 407 67.3
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.4e-163 580.1 415 66.5
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.8e-163 579.7 417 66.7
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.8e-163 579.7 407 67.3
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.8e-163 579.7 416 66.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.5e-162 576.6 407 67.8
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.5e-162 576.6 416 66.3
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.6e-162 575.9 407 66.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 5.8e-162 574.7 416 64.7
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 7.6e-162 574.3 407 67.3
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.9e-161 572.4 412 66.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.8e-161 572.0 407 65.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 7.1e-160 567.8 407 66.1
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 9.2e-160 567.4 412 65.5
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.1e-159 566.2 412 65.8
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.7e-159 565.8 421 63.7
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.5e-159 565.5 410 65.6
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.7e-158 563.1 404 65.6
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.3e-158 562.8 407 67.3
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.9e-158 562.0 417 64.5
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 5.1e-158 561.6 410 67.3
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.5e-157 559.3 418 64.6
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.1e-156 556.2 407 65.8
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.7e-156 555.1 406 64.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 4.0e-155 552.0 409 64.8
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.7e-153 546.6 407 66.1
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 6.4e-153 544.7 411 65.0
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.4e-152 543.5 407 61.9
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 5.4e-152 541.6 416 62.5
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.6e-151 538.5 408 63.7
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.0e-150 537.3 416 61.5
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.7e-150 536.6 377 67.9
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.9e-150 535.4 407 63.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 5.1e-150 535.0 416 62.7
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 5.1e-150 535.0 416 61.8
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 3.1e-147 525.8 407 61.4
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 4.0e-147 525.4 407 61.2
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 6.9e-147 524.6 407 61.2
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.5e-146 523.5 407 60.9
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.7e-145 520.0 417 63.1
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 6.4e-145 518.1 416 60.3
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 7.1e-144 514.6 417 62.8
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.2e-143 513.8 408 63.0
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 6.7e-142 508.1 416 58.7
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 3.3e-141 505.8 416 58.2
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 5.6e-141 505.0 408 61.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 9.6e-141 504.2 407 58.5
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.9e-137 492.7 406 57.9
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.5e-133 479.6 410 58.0
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 6.9e-131 471.5 407 56.8
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.1e-125 454.1 404 55.2
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 5.3e-123 445.3 353 63.7
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 4.6e-119 432.2 411 52.6
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 4.1e-115 419.1 411 51.6
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.5e-114 417.2 324 62.0
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 7.2e-112 408.3 248 79.0
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 6.1e-111 405.2 403 48.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.6e-103 380.6 408 48.8
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 4.7e-103 379.0 269 67.3
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.6e-93 346.7 409 44.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-91 341.3 303 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 5.3e-91 339.0 374 44.4
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 4.8e-84 315.8 297 51.9
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 8.3e-76 288.5 253 53.8
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 6.1e-71 272.3 313 44.7
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.9e-59 234.2 259 51.0
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 6.8e-54 215.7 134 72.4
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 9.2e-43 178.7 132 68.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 3.5e-42 176.8 159 56.6
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-33 147.1 99 68.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 2.1e-31 141.0 169 49.1
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-23 115.2 74 71.6
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 2.8e-23 114.0 71 73.2
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 3.1e-22 110.5 104 51.9
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 9.0e-22 109.0 71 71.8
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 5.8e-21 106.3 100 56.0
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-20 105.1 71 70.4
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-20 105.1 71 70.4
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 2.9e-12 77.4 237 30.0
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.2e-10 72.0 237 29.5
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.2e-10 72.0 237 29.5
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 1.6e-10 71.6 236 28.0
RcHm_v2.0_Chr2g0160731 Rosa chinensis HOM05D008065 ORTHO05D010197 2.7e-10 70.9 249 24.9
PSO170G6786 Papaver somniferum HOM05D000051 ORTHO05D000015 4.6e-10 70.1 243 25.9
vmacro18828 Vaccinium macrocarpon HOM05D001477 ORTHO05D001182 1.0e-09 68.9 295 23.7
HPP92_017621 Vanilla planifolia HOM05D000576 ORTHO05D000368 8.7e-09 65.9 247 26.3
Cc09_g05350 Coffea canephora HOM05D000051 ORTHO05D000015 2.5e-08 64.3 252 23.8
Aqoxy4G00633 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 3.3e-08 63.9 250 23.2
Medtr2g100570 Medicago truncatula HOM05D001477 ORTHO05D001182 4.3e-08 63.5 217 24.4
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 5.7e-08 63.2 246 27.6
FvH4_6g43960 Fragaria vesca HOM05D008065 ORTHO05D010197 7.4e-08 62.8 436 21.6
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 7.4e-08 62.8 229 28.4
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 9.7e-08 62.4 285 23.9
QL05p074592 Quercus lobata HOM05D000051 ORTHO05D000015 1.3e-07 62.0 211 27.0
Migut.E01649 Erythranthe guttata HOM05D005930 ORTHO05D003423 1.6e-07 61.6 137 27.7
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 1.6e-07 61.6 285 24.9
Migut.E00919 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.2e-07 61.2 137 27.7
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 2.2e-07 61.2 285 24.9
CsaV3_3G044070 Cucumis sativus L. HOM05D001477 ORTHO05D001182 4.8e-07 60.1 216 22.2
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 4.8e-07 60.1 219 26.0
RcHm_v2.0_Chr2g0160741 Rosa chinensis HOM05D008065 ORTHO05D010197 6.3e-07 59.7 312 20.8
SalBow5G1330 Salvia bowleyana HOM05D003488 ORTHO05D004214 6.3e-07 59.7 285 25.3
Peaxi162Scf00119g01220 Petunia axillaris HOM05D001396 ORTHO05D000493 8.2e-07 59.3 264 23.1
Nitab4.5_0001770g0090 Nicotiana tabacum HOM05D001396 ORTHO05D000493 1.1e-06 58.9 242 24.4
CDE05G1832 Ceratophyllum demersum HOM05D000051 ORTHO05D000493 1.4e-06 58.5 231 24.7
Lj1A869T76 Lonicera japonica HOM05D000051 ORTHO05D000015 2.4e-06 57.8 246 23.2
QL05p074566 Quercus lobata HOM05D000051 ORTHO05D000015 3.1e-06 57.4 210 27.1
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 4.1e-06 57.0 61 50.8
AUR62033859 Chenopodium quinoa HOM05D000312 ORTHO05D000221 5.3e-06 56.6 253 23.3
AUR62041668 Chenopodium quinoa HOM05D000312 ORTHO05D000221 6.9e-06 56.2 253 23.3


User provided reference genes

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