Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 7.8e-183 643.7 325 100.0
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.8e-126 456.4 307 74.6
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.3e-126 456.1 317 72.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.1e-123 445.7 317 71.3
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.9e-122 441.4 323 68.7
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.0e-121 440.7 320 69.4
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.2e-121 439.5 317 71.3
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.2e-121 439.5 316 69.9
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 6.5e-121 438.0 320 70.9
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 6.5e-121 438.0 307 71.7
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 2.5e-120 436.0 316 69.6
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.5e-120 436.0 321 68.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 4.2e-120 435.3 322 68.6
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 7.2e-120 434.5 312 70.8
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 9.4e-120 434.1 325 68.6
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.2e-119 433.7 310 70.6
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.6e-119 433.3 320 69.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.1e-119 433.0 320 70.3
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.7e-119 432.6 317 71.6
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.7e-119 432.6 323 69.3
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 3.6e-119 432.2 311 70.1
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 4.7e-119 431.8 311 70.1
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 8.0e-119 431.0 321 70.1
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 8.0e-119 431.0 306 70.6
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.4e-118 430.3 316 69.6
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.8e-118 429.9 342 66.1
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.8e-118 429.9 315 69.2
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.3e-118 429.5 306 70.9
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.3e-118 429.5 315 69.2
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 5.2e-118 428.3 306 70.9
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 5.2e-118 428.3 326 68.4
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 5.2e-118 428.3 337 66.2
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.8e-118 427.9 310 70.0
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 8.8e-118 427.6 316 68.7
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.2e-117 427.2 308 71.8
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.2e-117 427.2 321 67.9
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.5e-117 426.8 319 67.1
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.5e-117 426.8 308 69.8
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.6e-117 426.0 322 68.3
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.3e-116 423.7 316 67.1
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.8e-116 422.5 322 67.4
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.7e-116 422.2 305 71.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 4.8e-116 421.8 311 69.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 8.3e-116 421.0 318 67.3
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 3.1e-115 419.1 312 68.6
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 4.1e-115 418.7 312 68.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 7.0e-115 417.9 313 67.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.0e-114 416.4 318 67.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.9e-114 414.8 348 64.1
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.9e-113 412.5 316 64.6
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.8e-113 412.1 319 64.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 3.8e-113 412.1 307 67.1
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 3.8e-113 412.1 313 66.1
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 5.0e-113 411.8 320 65.6
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 8.5e-113 411.0 313 68.4
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 8.5e-113 411.0 325 64.3
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 8.5e-113 411.0 308 67.9
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.2e-112 409.1 335 65.1
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 3.2e-112 409.1 306 67.3
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 4.2e-112 408.7 312 64.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 4.2e-112 408.7 320 64.1
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 5.5e-112 408.3 320 64.7
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 9.4e-112 407.5 314 65.6
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 9.4e-112 407.5 317 64.0
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.2e-111 407.1 309 66.0
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.1e-111 406.4 312 68.6
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.1e-111 406.4 318 64.8
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.7e-111 406.0 317 64.4
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 3.6e-111 405.6 307 65.5
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.7e-111 405.2 342 62.9
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 4.7e-111 405.2 310 64.5
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 8.0e-111 404.4 321 62.9
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.0e-110 404.1 311 64.6
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 2.3e-110 402.9 320 66.9
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 3.0e-110 402.5 307 64.8
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.0e-110 402.5 317 65.6
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 4.0e-110 402.1 320 65.6
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.5e-109 400.2 309 64.1
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 2.0e-109 399.8 307 64.8
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.0e-109 399.8 268 74.3
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 2.0e-109 399.8 319 62.4
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.4e-109 398.7 313 65.5
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 5.7e-109 398.3 308 64.6
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 5.7e-109 398.3 310 63.9
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 7.5e-109 397.9 275 73.5
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.3e-108 397.1 307 64.5
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.2e-108 396.4 380 58.2
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.8e-107 393.3 345 62.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.8e-107 393.3 307 64.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.6e-106 390.2 307 65.1
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.0e-106 389.8 268 73.1
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.7e-106 389.4 335 59.7
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.0e-105 387.5 317 62.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.3e-105 387.1 368 56.8
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 2.9e-105 386.0 318 60.7
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 5.0e-105 385.2 306 62.7
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.1e-104 384.0 341 59.2
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.9e-104 383.3 302 66.9
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.9e-104 383.3 268 72.8
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 4.3e-104 382.1 291 65.6
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.1e-103 379.8 270 69.6
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.6e-103 379.0 307 62.9
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 6.1e-103 378.3 307 62.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-102 377.1 274 68.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.0e-102 375.9 315 62.2
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.0e-102 375.6 322 63.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 7.5e-101 371.3 283 67.1
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.8e-99 366.7 309 61.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.0e-97 360.9 308 60.7
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.3e-97 359.8 313 61.0
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 5.0e-97 358.6 320 58.8
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.3e-96 355.9 304 58.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 7.3e-96 354.8 301 59.1
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.6e-95 353.6 311 58.5
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.0e-94 350.9 314 59.9
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.0e-94 350.9 263 68.4
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 5.2e-94 348.6 307 57.3
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.2e-93 347.4 315 59.4
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.9e-91 340.1 316 57.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 4.1e-91 339.0 245 68.2
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.3e-86 323.2 231 68.0
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.5e-85 318.2 320 55.9
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 9.8e-85 317.8 309 57.3
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.0e-81 306.2 307 54.7
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 2.3e-78 296.6 227 66.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.2e-77 294.3 216 73.1
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 7.6e-77 291.6 232 61.6
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.0e-73 279.6 199 66.8
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.6e-71 273.9 309 50.2
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.6e-71 272.7 458 40.8
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.6e-63 246.1 183 68.3
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.0e-62 242.7 207 63.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 6.9e-62 241.9 175 71.4
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.9e-60 235.7 188 64.4
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 4.2e-59 232.6 381 40.2
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.4e-59 232.3 151 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.2e-58 231.1 192 58.3
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.6e-58 230.7 221 53.4
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.5e-58 229.6 271 49.1
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 3.9e-57 226.1 351 40.5
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 8.7e-57 224.9 174 67.2
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 5.6e-56 222.2 170 67.1
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.6e-56 222.2 237 53.6
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.1e-54 218.0 145 76.6
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.6e-53 213.4 148 73.0
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 8.4e-52 208.4 291 41.9
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.6e-50 204.1 171 63.2
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.3e-48 196.1 218 49.5
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.3e-47 194.5 195 55.9
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.1e-47 193.7 132 73.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.8e-47 193.4 181 58.6
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.6e-42 177.6 135 63.0
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.1e-41 172.6 291 41.9
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.3e-39 167.9 149 59.1
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 3.1e-38 163.3 117 65.8
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.2e-37 161.4 116 65.5
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 5.9e-37 159.1 187 43.9
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.1e-33 146.0 178 47.8
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 2.9e-28 130.2 106 65.1
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.9e-27 127.5 112 59.8
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 7.2e-27 125.6 116 58.6
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.6e-26 124.4 138 52.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.6e-21 107.1 126 45.2
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 8.5e-20 102.1 62 75.8
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 4.7e-18 96.3 83 60.2
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.5e-16 91.3 76 63.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 5.9e-13 79.3 76 56.6
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 7.7e-13 79.0 92 46.7
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.1e-10 70.9 61 60.7
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.7e-10 70.5 42 81.0
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 4.0e-09 66.6 61 59.0
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 1.5e-08 64.7 38 68.4
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 1.8e-06 57.8 52 57.7
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 2.4e-06 57.4 38 65.8
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 9.1e-06 55.5 36 66.7


User provided reference genes

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