Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 1.4e-40 169.1 79 100.0
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 5.2e-24 114.0 61 85.2
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 2.0e-23 112.1 60 85.0
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.3e-22 109.4 60 85.0
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 2.2e-22 108.6 60 81.7
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.4e-21 105.9 59 81.4
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 4.2e-21 104.4 61 80.3
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 5.4e-21 104.0 66 75.8
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 5.4e-21 104.0 59 76.3
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 7.1e-21 103.6 60 80.0
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.1e-21 103.6 60 80.0
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.1e-21 103.6 60 80.0
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.1e-21 103.6 60 80.0
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 7.1e-21 103.6 60 80.0
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 9.3e-21 103.2 60 81.7
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 9.3e-21 103.2 60 81.7
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.2e-20 102.8 59 78.0
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 1.2e-20 102.8 59 76.3
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 1.2e-20 102.8 66 74.2
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 1.6e-20 102.4 59 78.0
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.6e-20 102.4 59 78.0
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.6e-20 102.4 59 79.7
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.1e-20 102.1 59 79.7
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 2.1e-20 102.1 58 79.3
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 2.1e-20 102.1 60 81.7
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.7e-20 101.7 60 81.7
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 2.7e-20 101.7 59 76.3
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.7e-20 101.7 59 78.0
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 7.8e-20 100.1 56 80.4
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 7.8e-20 100.1 59 74.6
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.0e-19 99.8 60 78.3
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 1.0e-19 99.8 60 78.3
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 1.0e-19 99.8 61 78.7
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.3e-19 99.4 59 76.3
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 1.7e-19 99.0 54 81.5
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.7e-19 99.0 60 78.3
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.7e-19 99.0 60 78.3
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.7e-19 99.0 59 76.3
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 2.3e-19 98.6 63 74.6
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.3e-19 98.6 59 78.0
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.0e-19 98.2 59 76.3
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 3.0e-19 98.2 59 76.3
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 3.0e-19 98.2 60 75.0
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 3.0e-19 98.2 60 75.0
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 3.0e-19 98.2 60 78.3
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 3.0e-19 98.2 59 74.6
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.9e-19 97.8 59 74.6
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 5.1e-19 97.4 59 74.6
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 5.1e-19 97.4 64 75.0
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 6.6e-19 97.1 55 76.4
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.6e-19 97.1 57 78.9
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.6e-19 97.1 57 78.9
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 6.6e-19 97.1 56 76.8
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 6.6e-19 97.1 59 76.3
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 1.5e-18 95.9 60 73.3
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.5e-18 95.9 53 81.1
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.5e-18 95.9 55 78.2
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.5e-18 95.9 60 80.0
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 1.9e-18 95.5 59 72.9
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 1.9e-18 95.5 58 75.9
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 2.5e-18 95.1 58 75.9
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 2.5e-18 95.1 60 75.0
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 2.5e-18 95.1 57 75.4
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 3.3e-18 94.7 54 77.8
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 3.3e-18 94.7 54 77.8
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 3.3e-18 94.7 59 72.9
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 4.3e-18 94.4 58 79.3
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 4.3e-18 94.4 53 79.2
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.3e-18 94.4 60 73.3
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 4.3e-18 94.4 60 73.3
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 4.3e-18 94.4 60 73.3
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 5.6e-18 94.0 59 72.9
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 7.3e-18 93.6 60 75.0
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 7.3e-18 93.6 60 70.0
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 9.6e-18 93.2 60 73.3
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 9.6e-18 93.2 53 77.4
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 1.3e-17 92.8 60 73.3
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.3e-17 92.8 59 71.2
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.3e-17 92.8 60 70.0
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 1.6e-17 92.4 58 75.9
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.6e-17 92.4 53 79.2
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 2.1e-17 92.0 58 74.1
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.8e-17 91.7 57 77.2
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 2.8e-17 91.7 59 71.2
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 8.1e-17 90.1 57 71.9
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 1.1e-16 89.7 59 67.8
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.8e-16 89.0 59 67.8
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 2.4e-16 88.6 55 72.7
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 2.4e-16 88.6 55 72.7
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.4e-16 88.6 59 72.9
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 3.1e-16 88.2 58 67.2
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 5.3e-16 87.4 60 65.0
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.9e-16 87.0 74 55.4
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 6.9e-16 87.0 60 65.0
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 6.9e-16 87.0 53 73.6
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 9.0e-16 86.7 59 69.5
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 1.2e-15 86.3 53 73.6
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.5e-15 85.9 58 70.7
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 2.0e-15 85.5 57 71.9
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 2.6e-15 85.1 52 71.2
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 2.6e-15 85.1 60 63.3
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.8e-15 84.0 61 68.9
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.8e-15 84.0 61 68.9
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 5.8e-15 84.0 61 68.9
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 7.6e-15 83.6 67 58.2
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 9.9e-15 83.2 71 60.6
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 1.7e-14 82.4 66 57.6
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 2.2e-14 82.0 53 75.5
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.8e-14 81.3 54 72.2
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 8.4e-14 80.1 53 64.2
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.1e-13 79.7 50 68.0
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 1.4e-13 79.3 60 65.0
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 1.9e-13 79.0 62 62.9
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 2.4e-13 78.6 53 67.9
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 5.4e-13 77.4 63 61.9
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.2e-12 76.3 59 59.3
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 2.1e-12 75.5 58 58.6
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 3.5e-12 74.7 46 73.9
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 7.9e-12 73.6 54 63.0
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 7.9e-12 73.6 56 60.7
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.8e-11 72.4 55 67.3
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 2.3e-11 72.0 54 59.3
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 5.6e-10 67.4 54 57.4
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 7.4e-10 67.0 40 75.0
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 1.6e-09 65.9 56 57.1
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.1e-08 63.2 49 61.2
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.4e-08 62.8 62 53.2
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 2.6e-07 58.5 49 57.1
Medtr5g006260 Medicago truncatula HOM05D006086 ORTHO05D007396 7.6e-07 57.0 79 38.0
Pp3c4_16391 Physcomitrium patens HOM05D002570 ORTHO05D002689 9.9e-07 56.6 65 41.5
Mapoly0080s0018 Marchantia polymorpha HOM05D006086 ORTHO05D007396 1.3e-06 56.2 58 39.7


User provided reference genes

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