Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 3.2e-161 571.6 274 100.0
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 1.3e-98 363.6 257 70.0
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 1.1e-97 360.5 259 67.2
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.5e-97 360.1 257 66.9
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 3.2e-97 359.0 257 69.3
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 2.8e-96 355.9 259 66.4
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 1.0e-95 354.0 257 67.7
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 1.0e-95 354.0 252 65.9
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 1.5e-94 350.1 247 69.6
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 3.4e-94 349.0 259 66.8
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 9.8e-94 347.4 260 65.8
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 1.3e-93 347.1 260 65.4
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 1.3e-93 347.1 260 66.9
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 1.7e-93 346.7 265 64.2
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 2.2e-93 346.3 254 66.1
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 2.2e-93 346.3 269 66.5
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 3.7e-93 345.5 255 67.5
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 1.1e-92 344.0 257 65.4
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 1.4e-92 343.6 257 66.1
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 1.4e-92 343.6 255 64.7
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.4e-92 343.6 255 66.7
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 2.4e-92 342.8 248 66.9
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 7.0e-92 341.3 257 65.0
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 7.0e-92 341.3 257 64.6
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 2.0e-91 339.7 257 66.1
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 3.5e-91 339.0 257 65.4
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 4.5e-91 338.6 257 65.4
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 1.0e-90 337.4 257 64.2
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 1.3e-90 337.0 276 63.0
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.7e-90 336.7 252 65.5
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 1.7e-90 336.7 257 63.8
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 2.3e-90 336.3 256 65.6
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 2.9e-90 335.9 258 63.2
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 3.8e-90 335.5 270 64.1
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 5.0e-90 335.1 261 62.8
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 5.0e-90 335.1 260 64.2
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 6.6e-90 334.7 258 64.7
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 8.6e-90 334.3 254 62.2
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 1.5e-89 333.6 257 64.6
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 3.3e-89 332.4 274 60.6
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 3.3e-89 332.4 257 64.6
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 5.6e-89 331.6 274 60.2
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 9.5e-89 330.9 259 62.9
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 3.6e-88 328.9 257 63.0
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 1.4e-87 327.0 258 63.2
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.8e-87 326.6 255 62.7
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.8e-87 326.6 260 62.7
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.3e-87 326.2 290 58.6
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 2.3e-87 326.2 265 61.5
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 8.9e-87 324.3 258 61.6
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 8.9e-87 324.3 260 62.3
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 2.0e-86 323.2 258 62.0
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 4.4e-86 322.0 256 62.1
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 7.5e-86 321.2 243 63.0
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 9.8e-86 320.9 247 64.4
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.6e-83 313.5 242 64.5
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 2.7e-83 312.8 258 58.5
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 1.3e-82 310.5 249 62.2
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 3.0e-82 309.3 222 68.0
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.6e-80 303.5 247 60.7
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 2.1e-80 303.1 284 56.0
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 2.1e-80 303.1 240 62.9
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 1.4e-79 300.4 253 59.7
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 4.0e-79 298.9 265 55.1
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 5.2e-79 298.5 253 58.5
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.3e-77 293.9 215 68.4
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 4.9e-77 292.0 243 60.5
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 2.3e-74 283.1 211 66.4
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 5.0e-74 282.0 266 53.0
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 1.4e-71 273.9 251 57.8
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 5.2e-71 271.9 259 56.0
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 4.4e-70 268.9 255 53.3
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 1.9e-68 263.5 222 64.4
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.9e-65 253.4 231 54.5
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 4.7e-64 248.8 280 52.9
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 2.4e-63 246.5 254 51.6
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 4.4e-62 242.3 154 70.1
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 4.6e-59 232.3 208 58.2
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 1.3e-58 230.7 199 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 1.7e-58 230.3 181 59.1
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 5.6e-57 225.3 272 49.6
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 1.2e-54 217.6 361 41.8
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 1.9e-49 200.3 183 56.3
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 2.1e-48 196.8 260 45.4
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 1.1e-44 184.5 261 42.1
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 1.3e-40 171.0 258 41.5
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 4.6e-27 125.9 113 59.3
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 3.9e-26 122.9 149 50.3
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 7.6e-22 108.6 66 72.7
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 2.4e-15 87.0 68 63.2
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 1.5e-14 84.3 101 48.5
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 7.7e-14 82.0 105 45.7
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 1.3e-13 81.3 87 54.0
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 9.4e-12 75.1 116 43.1
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.1e-09 68.2 235 26.4
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 2.0e-09 67.4 254 26.8
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 9.7e-09 65.1 250 26.0
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 1.3e-08 64.7 262 25.6
Pp3s155_80 Physcomitrium patens HOM05D001816 ORTHO05D034380 1.3e-08 64.7 227 27.8
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 2.2e-08 63.9 258 25.2
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.8e-08 63.5 241 27.4
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 3.7e-08 63.2 262 25.2
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.7e-08 63.2 255 26.7
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 3.7e-08 63.2 237 27.8
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 3.7e-08 63.2 240 24.2
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 3.7e-08 63.2 240 25.0
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 4.8e-08 62.8 254 24.8
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 4.8e-08 62.8 241 26.1
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 4.8e-08 62.8 235 24.7
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 6.3e-08 62.4 254 24.8
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 6.3e-08 62.4 255 25.9
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 6.3e-08 62.4 255 25.9
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 6.3e-08 62.4 240 27.1
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 6.3e-08 62.4 244 23.8
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 8.2e-08 62.0 254 25.2
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 8.2e-08 62.0 241 26.1
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.1e-07 61.6 255 26.3
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 1.1e-07 61.6 239 27.2
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.4e-07 61.2 240 24.6
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 1.4e-07 61.2 239 27.2
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.4e-07 61.2 238 25.2
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-07 60.8 255 25.5
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.8e-07 60.8 230 26.1
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 2.4e-07 60.5 255 25.5
PRCOL_00002617 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 2.4e-07 60.5 203 28.6
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 3.1e-07 60.1 239 25.9
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 3.1e-07 60.1 255 25.5
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 3.1e-07 60.1 255 25.5
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 3.1e-07 60.1 281 26.0
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.1e-07 60.1 257 24.1
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 5.3e-07 59.3 255 25.1
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 9.1e-07 58.5 131 32.1
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 1.2e-06 58.2 241 24.9
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 1.5e-06 57.8 252 24.6
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 2.6e-06 57.0 237 24.9
DCAR_025594 Daucus carota HOM05D002211 ORTHO05D002206 3.4e-06 56.6 28 96.4
RcHm_v2.0_Chr5g0008751 Rosa chinensis HOM05D007625 ORTHO05D343624 3.4e-06 56.6 35 68.6
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 4.5e-06 56.2 252 23.8
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 7.7e-06 55.5 240 25.4


User provided reference genes

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