Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 6.0e-49 197.2 101 100.0
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.0e-32 143.3 102 71.6
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 1.1e-31 139.8 104 71.2
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 4.8e-30 134.4 100 67.0
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 4.8e-30 134.4 105 65.7
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.1e-29 131.3 101 69.3
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.1e-29 131.3 101 69.3
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 5.3e-29 131.0 103 62.1
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.9e-29 130.6 102 69.6
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.0e-29 130.2 99 67.7
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 1.2e-28 129.8 102 65.7
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.0e-28 129.0 102 63.7
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.0e-28 129.0 102 65.7
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 5.9e-28 127.5 103 66.0
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.0e-27 126.7 101 67.3
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 1.3e-27 126.3 102 62.7
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.0e-27 124.4 101 68.3
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 5.0e-27 124.4 105 62.9
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 6.5e-27 124.0 105 62.9
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 8.5e-27 123.6 102 67.6
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 8.5e-27 123.6 101 65.3
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.1e-26 123.2 101 67.3
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 1.4e-26 122.9 102 66.7
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.9e-26 122.5 104 59.6
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.9e-26 122.5 102 64.7
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.9e-26 122.5 105 63.8
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 2.5e-26 122.1 99 64.6
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 2.5e-26 122.1 102 65.7
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 5.5e-26 120.9 103 58.3
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 7.2e-26 120.6 101 62.4
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 7.2e-26 120.6 101 67.3
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 9.4e-26 120.2 101 66.3
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 1.2e-25 119.8 104 60.6
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.6e-25 119.4 105 61.9
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.6e-25 119.4 101 65.3
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.1e-25 119.0 105 61.9
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 2.7e-25 118.6 105 61.9
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.7e-25 118.6 98 66.3
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 4.6e-25 117.9 101 63.4
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 4.6e-25 117.9 101 65.3
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 4.6e-25 117.9 101 65.3
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 4.6e-25 117.9 101 65.3
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 6.1e-25 117.5 107 57.0
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 7.9e-25 117.1 102 64.7
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.0e-24 116.7 106 62.3
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.4e-24 116.3 101 64.4
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 1.4e-24 116.3 97 63.9
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.4e-24 116.3 105 60.0
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.3e-24 115.5 107 56.1
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 2.3e-24 115.5 101 62.4
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.3e-24 115.5 107 61.7
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 2.3e-24 115.5 105 60.0
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.0e-24 115.2 102 63.7
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 3.0e-24 115.2 102 63.7
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 3.0e-24 115.2 101 62.4
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 3.0e-24 115.2 103 63.1
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 3.0e-24 115.2 102 62.7
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 5.1e-24 114.4 101 60.4
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 5.1e-24 114.4 104 57.7
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 6.7e-24 114.0 92 65.2
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 6.7e-24 114.0 105 59.0
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 1.1e-23 113.2 105 60.0
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.5e-23 112.8 101 59.4
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 1.5e-23 112.8 101 61.4
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 1.5e-23 112.8 101 58.4
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.0e-23 112.5 101 60.4
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 2.5e-23 112.1 101 59.4
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 2.5e-23 112.1 101 61.4
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 3.3e-23 111.7 101 58.4
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 3.3e-23 111.7 101 62.4
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 3.3e-23 111.7 99 63.6
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.7e-23 110.9 101 59.4
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 5.7e-23 110.9 101 59.4
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 5.7e-23 110.9 101 62.4
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 5.7e-23 110.9 101 61.4
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 9.7e-23 110.2 103 64.1
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 9.7e-23 110.2 101 61.4
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 1.3e-22 109.8 101 60.4
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 1.7e-22 109.4 102 61.8
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 1.7e-22 109.4 102 60.8
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 2.8e-22 108.6 91 62.6
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 3.7e-22 108.2 100 60.0
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 3.7e-22 108.2 99 61.6
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 3.7e-22 108.2 101 59.4
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 3.7e-22 108.2 99 61.6
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 4.8e-22 107.8 106 56.6
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 6.3e-22 107.5 106 60.4
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 1.1e-21 106.7 101 59.4
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 2.4e-21 105.5 101 56.4
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 2.4e-21 105.5 86 62.8
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 3.1e-21 105.1 101 57.4
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 3.1e-21 105.1 104 52.9
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 5.3e-21 104.4 104 58.7
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 5.3e-21 104.4 102 57.8
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 5.3e-21 104.4 100 60.0
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 6.9e-21 104.0 101 60.4
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 6.9e-21 104.0 101 58.4
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 9.1e-21 103.6 101 57.4
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 9.1e-21 103.6 101 56.4
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.2e-20 103.2 101 56.4
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.2e-20 103.2 101 56.4
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.2e-20 103.2 101 54.5
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 2.0e-20 102.4 106 56.6
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 2.0e-20 102.4 99 59.6
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 3.4e-20 101.7 98 57.1
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 4.5e-20 101.3 85 58.8
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 5.9e-20 100.9 105 56.2
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.9e-20 100.9 82 62.2
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 2.9e-19 98.6 102 56.9
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 3.8e-19 98.2 102 56.9
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 5.0e-19 97.8 101 56.4
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 6.5e-19 97.4 76 67.1
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 6.5e-19 97.4 93 58.1
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 8.5e-19 97.1 102 52.0
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.1e-18 96.7 104 55.8
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.4e-18 96.3 98 56.1
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 2.5e-18 95.5 102 55.9
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 2.5e-18 95.5 81 58.0
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 2.5e-18 95.5 98 54.1
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 4.2e-18 94.7 102 53.9
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 7.2e-18 94.0 104 54.8
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 7.2e-18 94.0 102 56.9
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 7.2e-18 94.0 103 51.5
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 7.2e-18 94.0 102 50.0
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 9.4e-18 93.6 103 53.4
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 9.4e-18 93.6 102 54.9
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.2e-17 93.2 101 54.5
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 2.1e-17 92.4 102 53.9
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.1e-17 92.4 102 53.9
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.1e-17 92.4 102 48.0
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.7e-17 92.0 102 53.9
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 4.7e-17 91.3 102 53.9
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.7e-17 91.3 82 58.5
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 4.7e-17 91.3 99 52.5
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 7.9e-17 90.5 102 49.0
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 7.9e-17 90.5 103 51.5
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 7.9e-17 90.5 103 51.5
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.9e-17 90.5 101 48.5
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 7.9e-17 90.5 99 52.5
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 7.9e-17 90.5 100 52.0
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.0e-16 90.1 87 57.5
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.4e-16 89.7 102 48.0
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 1.4e-16 89.7 102 52.9
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.4e-16 89.7 102 53.9
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 2.3e-16 89.0 103 49.5
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 2.3e-16 89.0 103 49.5
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.3e-16 89.0 101 48.5
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 2.3e-16 89.0 87 58.6
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 3.0e-16 88.6 103 50.5
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 3.0e-16 88.6 103 50.5
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 3.0e-16 88.6 103 50.5
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 5.1e-16 87.8 102 52.0
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 5.1e-16 87.8 96 53.1
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 6.7e-16 87.4 103 48.5
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 6.7e-16 87.4 103 48.5
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.7e-16 87.4 101 48.5
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 8.8e-16 87.0 101 54.5
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 2.6e-15 85.5 103 51.5
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 2.6e-15 85.5 103 51.5
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 3.3e-15 85.1 103 51.5
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 3.3e-15 85.1 103 49.5
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 3.3e-15 85.1 103 51.5
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 3.3e-15 85.1 103 51.5
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 3.3e-15 85.1 103 49.5
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 7.4e-15 84.0 103 50.5
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 4.8e-14 81.3 99 47.5
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 4.8e-14 81.3 74 54.1
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.4e-13 79.7 90 50.0
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 1.8e-13 79.3 92 47.8
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.4e-13 79.0 80 57.5
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 5.3e-13 77.8 84 52.4
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 5.3e-13 77.8 84 52.4
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 7.0e-13 77.4 84 52.4
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 7.0e-13 77.4 90 48.9
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.3e-11 73.2 83 50.6
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 1.7e-11 72.8 83 50.6
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 1.7e-11 72.8 83 50.6
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 6.5e-11 70.9 83 48.2
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 1.1e-10 70.1 65 53.8
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 2.5e-10 68.9 62 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 9.4e-10 67.0 88 46.6
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.6e-09 66.2 85 44.7
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 2.7e-09 65.5 80 47.5
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 3.6e-09 65.1 80 45.0
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 3.6e-09 65.1 84 46.4
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 3.6e-09 65.1 79 45.6


User provided reference genes

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