Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 4.9e-146 521.2 269 100.0
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.6e-101 373.2 264 73.5
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.3e-98 363.6 263 72.2
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.7e-98 363.2 269 70.3
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.2e-98 362.8 263 72.2
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.4e-97 360.1 263 71.5
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.9e-97 359.8 262 71.4
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 4.6e-96 355.1 270 71.1
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.6e-96 355.1 261 71.3
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 4.6e-96 355.1 263 70.7
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 7.9e-96 354.4 261 70.9
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.0e-95 354.0 265 70.9
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.0e-95 354.0 266 71.1
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 3.0e-95 352.4 267 70.8
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 6.7e-95 351.3 263 70.3
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.5e-94 350.1 264 69.7
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 3.3e-94 349.0 264 68.2
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 4.3e-94 348.6 264 68.6
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 5.6e-94 348.2 277 68.6
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 5.6e-94 348.2 263 68.8
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 5.6e-94 348.2 261 70.1
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 7.4e-94 347.8 262 72.1
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 7.4e-94 347.8 269 68.0
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.3e-93 347.1 261 70.9
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.6e-93 346.7 275 66.5
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 2.8e-93 345.9 261 69.0
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.1e-92 344.0 271 66.8
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.4e-92 343.6 262 68.7
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.4e-92 343.6 273 68.1
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.8e-92 343.2 272 68.0
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 2.4e-92 342.8 264 69.7
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 6.9e-92 341.3 263 69.6
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 9.0e-92 340.9 272 64.0
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.2e-91 340.5 261 68.2
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.5e-91 340.1 269 66.2
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.0e-91 339.7 273 66.7
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.6e-91 339.3 269 66.5
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.4e-91 339.0 273 67.4
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 3.4e-91 339.0 263 67.7
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 4.5e-91 338.6 270 64.1
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 4.5e-91 338.6 261 67.8
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 5.8e-91 338.2 273 66.3
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 5.8e-91 338.2 267 67.8
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 7.6e-91 337.8 273 65.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.3e-90 337.0 273 65.6
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.3e-90 337.0 275 65.1
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.2e-90 336.3 275 65.8
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 2.9e-90 335.9 269 66.9
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 3.8e-90 335.5 273 65.9
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.8e-90 335.5 273 64.8
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 6.4e-90 334.7 273 66.3
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.4e-89 332.8 271 65.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.2e-89 332.4 270 64.1
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 4.2e-89 332.0 263 66.9
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.5e-89 331.6 271 66.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 7.1e-89 331.3 258 67.4
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-88 330.5 276 65.6
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.6e-88 330.1 267 64.4
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.6e-88 330.1 271 64.9
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 4.6e-88 328.6 275 64.4
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 6.0e-88 328.2 254 66.1
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 6.0e-88 328.2 264 64.4
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 7.9e-88 327.8 265 65.7
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.0e-87 327.4 274 62.4
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-87 327.0 286 62.6
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.3e-87 326.2 255 68.6
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 2.3e-87 326.2 273 66.3
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.7e-87 324.3 276 64.9
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-86 323.9 276 64.9
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 3.3e-86 322.4 269 65.4
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.3e-85 320.5 265 65.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.6e-85 320.1 308 56.5
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.6e-85 320.1 264 63.6
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.1e-85 319.7 264 63.6
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.1e-85 317.8 283 61.1
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 6.9e-84 314.7 264 64.8
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 4.5e-83 312.0 266 63.2
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 6.5e-82 308.1 338 53.3
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 5.5e-81 305.1 264 64.4
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.2e-80 303.9 266 64.3
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.1e-80 303.1 271 62.0
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 3.5e-80 302.4 266 63.2
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 6.0e-80 301.6 217 72.8
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 6.7e-79 298.1 263 61.2
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 1.9e-78 296.6 261 60.9
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 2.5e-78 296.2 262 60.7
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.5e-78 296.2 247 65.6
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.3e-77 293.9 248 64.1
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.0e-74 284.3 269 57.6
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.1e-73 280.8 266 54.9
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.9e-70 270.0 267 53.9
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 3.8e-66 255.8 249 56.2
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 1.6e-64 250.4 280 50.4
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.6e-64 250.4 238 58.8
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.1e-64 250.0 190 67.4
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.4e-63 247.3 268 53.4
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.3e-61 240.7 241 59.8
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 8.5e-58 228.0 179 64.8
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 4.7e-56 222.2 264 47.3
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 3.9e-55 219.2 256 45.3
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.5e-54 217.2 192 60.4
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 5.7e-54 215.3 148 70.9
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 4.5e-51 205.7 255 46.3
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 9.4e-49 198.0 225 47.1
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 1.0e-47 194.5 193 59.6
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.6e-40 169.5 130 65.4
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 6.8e-39 165.2 345 36.8
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-36 156.8 113 71.7
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.1e-36 156.4 113 70.8
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.3e-34 150.2 106 70.8
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 1.8e-31 140.6 140 59.3
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.8e-28 130.6 108 64.8
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.5e-27 125.9 142 53.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 7.8e-27 125.2 110 61.8
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 7.8e-27 125.2 104 67.3
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 1.0e-26 124.8 84 72.6
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.5e-25 120.9 268 33.6
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 5.6e-25 119.0 84 66.7
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 3.6e-24 116.3 245 29.8
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 8.0e-24 115.2 96 61.5
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 4.0e-23 112.8 91 65.9
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 2.0e-22 110.5 101 59.4
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 3.7e-21 106.3 67 74.6
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-20 103.6 152 46.1
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 7.0e-20 102.1 69 76.8
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-19 100.5 56 80.4
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 3.5e-19 99.8 69 75.4
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.1e-17 94.7 116 47.4
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-17 94.0 54 83.3
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 2.5e-17 93.6 69 63.8
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 4.3e-17 92.8 82 61.0
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.1e-15 88.2 103 50.5
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 7.0e-12 75.5 98 45.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 5.6e-09 65.9 82 47.6
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.8e-08 63.5 65 55.4


User provided reference genes

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