Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 3.5e-62 241.5 127 100.0
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 5.7e-20 101.3 124 46.8
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 4.8e-19 98.2 134 44.0
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 8.2e-19 97.4 146 39.0
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 2.4e-18 95.9 124 46.0
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 4.1e-18 95.1 132 43.9
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 5.3e-18 94.7 115 46.1
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 9.0e-18 94.0 132 43.9
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 3.4e-17 92.0 118 46.6
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 4.5e-17 91.7 107 47.7
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 4.5e-17 91.7 117 46.2
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 7.6e-17 90.9 138 44.2
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 2.2e-16 89.4 129 43.4
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 5.0e-16 88.2 135 43.0
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 6.5e-16 87.8 135 41.5
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 1.1e-15 87.0 110 45.5
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 2.5e-15 85.9 121 44.6
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 4.2e-15 85.1 121 44.6
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 5.5e-15 84.7 115 43.5
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 9.4e-15 84.0 111 47.7
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 6.1e-14 81.3 109 44.0
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 1.4e-13 80.1 136 41.2
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 1.4e-13 80.1 114 44.7
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 1.8e-13 79.7 91 50.5
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 2.3e-13 79.3 124 40.3
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 5.1e-13 78.2 111 43.2
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 5.1e-13 78.2 111 43.2
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 6.7e-13 77.8 119 40.3
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 6.7e-13 77.8 128 39.8
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 3.3e-12 75.5 123 38.2
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 5.7e-12 74.7 116 41.4
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 7.4e-12 74.3 107 42.1
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 7.4e-12 74.3 80 47.5
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 1.3e-11 73.6 118 35.6
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.3e-11 73.6 114 38.6
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 1.7e-11 73.2 106 39.6
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.7e-11 73.2 118 36.4
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.7e-11 73.2 111 42.3
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 1.7e-11 73.2 87 41.4
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 2.2e-11 72.8 109 40.4
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 2.8e-11 72.4 113 42.5
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 2.8e-11 72.4 116 36.2
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 3.7e-11 72.0 112 41.1
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 3.7e-11 72.0 114 38.6
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 4.8e-11 71.6 114 40.4
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 4.8e-11 71.6 113 42.5
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 4.8e-11 71.6 117 37.6
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.8e-11 71.6 104 38.5
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 6.3e-11 71.2 113 39.8
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 1.1e-10 70.5 125 38.4
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 1.4e-10 70.1 113 38.1
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 1.4e-10 70.1 60 55.0
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 1.4e-10 70.1 114 38.6
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 1.4e-10 70.1 119 38.7
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 1.8e-10 69.7 119 37.0
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 1.8e-10 69.7 69 49.3
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 2.4e-10 69.3 112 41.1
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 2.4e-10 69.3 120 34.2
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 2.4e-10 69.3 126 35.7
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 5.3e-10 68.2 111 40.5
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 5.3e-10 68.2 135 38.5
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 5.3e-10 68.2 64 45.3
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 6.9e-10 67.8 104 38.5
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 9.1e-10 67.4 115 40.9
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 9.1e-10 67.4 129 39.5
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 9.1e-10 67.4 136 38.2
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 9.1e-10 67.4 114 36.8
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 1.2e-09 67.0 129 36.4
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 1.2e-09 67.0 103 40.8
CSS0002382 Camellia sinensis var. sinensis HOM05D007333 ORTHO05D008874 1.5e-09 66.6 119 37.8
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 2.6e-09 65.9 124 34.7
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 4.5e-09 65.1 109 37.6
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 4.5e-09 65.1 100 42.0
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 7.7e-09 64.3 108 38.0
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 7.7e-09 64.3 115 40.0
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.3e-08 63.5 115 40.0
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 1.7e-08 63.2 138 34.1
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 2.2e-08 62.8 110 37.3
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 3.8e-08 62.0 124 34.7
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 3.8e-08 62.0 62 45.2
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 5.0e-08 61.6 126 35.7
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 8.5e-08 60.8 151 33.8
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 1.4e-07 60.1 93 37.6
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 5.5e-07 58.2 115 33.0
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 7.2e-07 57.8 50 56.0
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 9.4e-07 57.4 39 61.5
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 1.2e-06 57.0 77 37.7
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 1.2e-06 57.0 135 29.6
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 3.6e-06 55.5 71 40.8
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 3.6e-06 55.5 107 34.6
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 6.1e-06 54.7 112 32.1
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 6.1e-06 54.7 60 38.3
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 7.9e-06 54.3 142 31.7


User provided reference genes

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