Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.0e-70 268.5 144 100.0
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.1e-08 63.9 39 79.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 4.3e-08 62.0 42 71.4
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 5.6e-08 61.6 39 71.8
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 5.6e-08 61.6 39 76.9
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 5.6e-08 61.6 42 71.4
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 7.4e-08 61.2 167 31.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 7.4e-08 61.2 167 31.7
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 9.6e-08 60.8 42 71.4
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 2.1e-07 59.7 42 69.0
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 2.1e-07 59.7 42 71.4
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 2.8e-07 59.3 38 76.3
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 2.8e-07 59.3 39 66.7
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 2.8e-07 59.3 175 30.9
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 2.8e-07 59.3 175 30.9
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.8e-07 59.3 42 69.0
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 2.8e-07 59.3 42 69.0
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 66.7
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 3.7e-07 58.9 39 71.8
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 3.7e-07 58.9 42 69.0
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.7e-07 58.9 40 72.5
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.8e-07 58.5 160 31.2
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.8e-07 58.5 40 72.5
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.8e-07 58.5 40 72.5
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.8e-07 58.5 40 72.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 4.8e-07 58.5 37 73.0
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.8e-07 58.5 42 69.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.8e-07 58.5 42 69.0
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 4.8e-07 58.5 42 69.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 4.8e-07 58.5 40 72.5
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 4.8e-07 58.5 40 72.5
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 6.2e-07 58.2 40 70.0
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 6.2e-07 58.2 40 70.0
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 6.2e-07 58.2 39 69.2
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 6.2e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 8.1e-07 57.8 42 66.7
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 8.1e-07 57.8 42 66.7
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 8.1e-07 57.8 38 71.1
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 8.1e-07 57.8 38 71.1
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 8.1e-07 57.8 42 66.7
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 8.1e-07 57.8 174 30.5
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 8.1e-07 57.8 36 75.0
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.1e-06 57.4 42 66.7
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.1e-06 57.4 179 29.6
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.1e-06 57.4 179 29.6
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.1e-06 57.4 42 66.7
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.1e-06 57.4 161 31.7
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.1e-06 57.4 42 69.0
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.1e-06 57.4 42 66.7
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.1e-06 57.4 42 66.7
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.1e-06 57.4 40 70.0
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.4e-06 57.0 42 66.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-06 57.0 179 29.6
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-06 57.0 179 29.6
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.4e-06 57.0 179 29.6
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.8e-06 56.6 42 66.7
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.8e-06 56.6 42 66.7
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.8e-06 56.6 42 66.7
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.8e-06 56.6 42 66.7
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.8e-06 56.6 42 64.3
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.8e-06 56.6 171 29.8
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.8e-06 56.6 42 66.7
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.8e-06 56.6 42 66.7
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 2.4e-06 56.2 42 64.3
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.4e-06 56.2 40 70.0
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 3.1e-06 55.8 40 67.5
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.1e-06 55.8 42 61.9
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.1e-06 55.8 42 61.9
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 3.1e-06 55.8 42 61.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 3.1e-06 55.8 40 67.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 3.1e-06 55.8 42 61.9
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.0e-06 55.5 42 64.3
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 4.0e-06 55.5 192 27.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 4.0e-06 55.5 35 71.4
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 4.0e-06 55.5 42 64.3
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 4.0e-06 55.5 42 61.9
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.0e-06 55.5 42 64.3
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 4.0e-06 55.5 42 64.3
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 4.0e-06 55.5 42 64.3
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 5.3e-06 55.1 179 28.5
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 5.3e-06 55.1 176 30.1
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 5.3e-06 55.1 42 61.9
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 9.0e-06 54.3 33 75.8
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.0e-06 54.3 33 75.8


User provided reference genes

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