Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 1.2e-279 966.1 577 100.0
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 7.1e-70 269.2 769 33.8
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.0e-63 248.8 737 34.7
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.9e-62 244.6 719 33.4
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 5.5e-62 243.0 667 34.2
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 2.1e-61 241.1 646 34.4
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 3.5e-61 240.4 718 33.4
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.6e-61 240.0 720 33.6
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 6.7e-60 236.1 671 35.0
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.1e-59 235.3 733 33.6
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.9e-59 234.6 672 34.8
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 7.4e-59 232.6 680 33.2
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 3.1e-57 227.3 739 31.8
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 3.1e-57 227.3 734 33.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 5.3e-57 226.5 567 37.4
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.2e-56 225.3 732 32.0
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 2.0e-56 224.6 751 32.5
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.3e-55 221.9 670 33.6
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.9e-55 220.7 689 32.8
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 5.0e-55 219.9 741 32.0
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.1e-54 218.8 745 33.4
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.5e-54 217.6 779 30.3
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 4.2e-54 216.9 666 35.0
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.2e-54 216.9 611 35.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.4e-54 215.7 740 33.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.2e-53 215.3 749 33.5
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 2.1e-53 214.5 733 31.7
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.7e-53 214.2 706 32.6
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.7e-53 214.2 674 33.4
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.6e-53 213.8 731 31.9
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 4.6e-53 213.4 665 33.4
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 7.9e-53 212.6 638 36.1
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.4e-52 211.8 674 33.2
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 3.9e-52 210.3 737 32.2
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 5.1e-52 209.9 748 32.0
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 6.7e-52 209.5 748 31.6
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.5e-51 208.4 748 33.4
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.0e-51 208.0 744 32.3
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.0e-51 208.0 732 32.8
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 2.5e-51 207.6 736 31.5
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 3.3e-51 207.2 714 32.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 4.3e-51 206.8 790 30.1
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.3e-50 205.3 745 31.0
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 1.7e-50 204.9 737 30.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.2e-50 204.5 742 31.7
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.2e-50 204.5 746 31.1
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.8e-50 204.1 711 32.3
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.7e-50 203.8 665 34.9
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 4.8e-50 203.4 687 34.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.8e-50 203.4 692 31.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 4.8e-50 203.4 704 32.8
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 6.3e-50 203.0 847 28.7
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 6.3e-50 203.0 748 30.5
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 8.2e-50 202.6 708 31.9
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.8e-49 201.4 674 31.0
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.1e-49 200.7 747 32.7
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 4.1e-49 200.3 664 34.0
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 5.3e-49 199.9 739 31.7
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.9e-49 199.5 739 29.9
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.5e-48 198.4 756 31.1
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.0e-48 198.0 679 33.6
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 4.5e-48 196.8 745 31.4
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 5.9e-48 196.4 736 32.5
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.7e-48 196.1 712 31.9
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.2e-47 194.5 586 32.3
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 3.8e-47 193.7 715 30.3
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 5.0e-47 193.4 672 33.3
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 5.0e-47 193.4 550 34.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 5.0e-47 193.4 749 30.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 6.5e-47 193.0 733 31.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.5e-46 189.9 587 35.4
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.2e-45 188.7 725 32.3
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.6e-45 188.3 644 33.5
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.0e-44 185.7 710 31.1
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.4e-44 185.3 663 30.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.8e-44 184.9 755 29.3
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.1e-43 182.2 749 30.2
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.6e-43 181.0 711 31.4
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 5.7e-43 179.9 761 33.8
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.8e-42 176.8 606 31.5
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.1e-41 175.6 697 31.0
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 1.1e-41 175.6 741 30.1
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 2.4e-41 174.5 613 31.2
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.4e-41 174.5 677 31.3
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.1e-41 173.7 724 31.5
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.1e-41 173.7 676 31.1
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.3e-41 173.3 635 29.9
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 7.0e-41 172.9 724 32.2
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 9.1e-41 172.6 659 31.6
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.6e-40 171.0 674 31.3
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 3.5e-40 170.6 696 30.5
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 5.9e-40 169.9 797 30.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.9e-40 169.9 730 29.6
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 7.7e-40 169.5 740 28.8
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.9e-39 167.5 764 31.5
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.9e-39 167.5 625 33.8
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 6.5e-39 166.4 728 30.9
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 3.2e-38 164.1 663 32.1
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.2e-37 162.2 681 30.8
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 6.1e-37 159.8 600 31.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 8.0e-37 159.5 794 31.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 1.0e-36 159.1 696 30.9
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.0e-36 159.1 768 27.0
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.4e-36 158.7 689 31.6
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.7e-36 156.4 521 30.3
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.0e-35 154.8 708 29.7
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 2.6e-35 154.5 651 32.1
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 7.4e-35 152.9 731 28.7
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.7e-34 151.8 523 30.0
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.8e-34 151.0 522 29.9
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 2.4e-33 147.9 624 30.0
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.0e-32 144.8 711 27.8
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 2.6e-32 144.4 541 29.8
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 5.9e-32 143.3 707 26.7
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 7.7e-32 142.9 802 25.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.7e-31 141.7 727 28.7
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-29 135.6 632 28.0
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.0e-28 132.5 653 30.6
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.0e-28 132.5 615 28.9
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.4e-28 132.1 608 30.1
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.4e-28 132.1 766 28.3
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.0e-27 128.3 170 49.4
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.6e-27 127.9 776 28.0
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.6e-27 127.9 732 26.1
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 4.4e-27 127.1 648 31.2
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.3e-26 125.6 644 31.4
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.3e-26 125.6 644 31.4
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-24 119.0 598 30.8
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.6e-24 118.6 569 31.3
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.7e-24 117.9 685 29.3
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.7e-24 117.9 548 30.3
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 4.5e-24 117.1 659 30.5
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.0e-23 115.9 291 35.1
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.3e-23 115.5 548 30.5
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 2.9e-23 114.4 455 34.7
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.5e-22 111.3 548 30.1
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 4.2e-22 110.5 669 29.6
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 7.2e-22 109.8 166 42.8
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 8.0e-21 106.3 513 27.1
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 5.2e-20 103.6 172 45.3
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.6e-19 101.3 700 27.7
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.4e-19 100.9 291 33.0
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 5.7e-19 100.1 345 31.9
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 5.7e-19 100.1 446 30.7
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.3e-18 99.0 735 27.2
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.8e-17 95.1 544 26.8
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.8e-17 95.1 214 39.7
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.1e-17 94.4 125 47.2
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.4e-17 93.6 692 24.3
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.6e-16 92.0 271 32.8
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 5.0e-15 87.0 653 25.9
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-14 85.5 450 30.4
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 1.9e-14 85.1 168 44.6
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.2e-14 84.0 156 37.2
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.8e-12 78.6 221 30.8
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 6.8e-12 76.6 222 31.5
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.5e-11 75.5 115 47.8
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 2.6e-11 74.7 104 54.8
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 5.7e-11 73.6 138 39.1
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 9.8e-11 72.8 421 29.9
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 2.4e-09 68.2 853 25.9
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 3.2e-09 67.8 825 23.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.0e-09 66.6 301 26.6
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 9.2e-09 66.2 255 30.6
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 3.3e-06 57.8 221 33.0
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 5.6e-06 57.0 102 40.2
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 5.6e-06 57.0 102 40.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 5.6e-06 57.0 224 29.9


User provided reference genes

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