Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 3.1e-75 285.0 143 100.0
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 2.1e-71 272.3 143 95.8
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.2e-63 246.5 143 86.7
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.6e-63 245.0 144 86.1
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 8.0e-63 243.8 144 84.7
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.8e-62 242.7 143 83.9
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 3.0e-62 241.9 143 82.5
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.5e-61 239.6 144 83.3
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 2.0e-61 239.2 143 83.9
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.0e-61 239.2 143 82.5
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 5.7e-61 237.7 144 84.0
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 5.7e-61 237.7 144 82.6
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 9.7e-61 236.9 146 81.5
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.3e-60 236.5 143 81.8
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 2.8e-60 235.3 143 82.5
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 4.8e-60 234.6 143 82.5
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 6.3e-60 234.2 143 83.9
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 1.1e-59 233.4 143 82.5
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 1.8e-59 232.6 143 80.4
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.4e-59 232.3 143 81.1
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 5.3e-59 231.1 143 81.1
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 7.0e-59 230.7 144 79.9
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 2.0e-58 229.2 143 80.4
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 4.5e-58 228.0 144 78.5
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 5.9e-58 227.6 150 76.7
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 7.7e-58 227.3 143 79.0
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 7.7e-58 227.3 144 79.2
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.0e-57 226.9 132 86.4
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.0e-57 226.9 144 81.9
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 2.9e-57 225.3 145 75.9
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.9e-57 225.3 144 76.4
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 3.8e-57 224.9 143 80.4
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 3.8e-57 224.9 143 77.6
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 6.5e-57 224.2 148 76.4
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 6.5e-57 224.2 148 76.4
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 6.5e-57 224.2 148 76.4
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.1e-56 223.4 146 80.8
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.1e-56 223.4 146 80.8
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.1e-56 223.4 148 77.7
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.1e-56 223.4 144 78.5
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.1e-56 223.4 143 78.3
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 1.5e-56 223.0 130 85.4
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.5e-56 223.0 143 79.7
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.5e-56 223.0 143 79.7
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 2.5e-56 222.2 146 77.4
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 2.5e-56 222.2 141 78.7
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.5e-56 222.2 144 77.8
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 2.5e-56 222.2 143 79.0
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.5e-56 222.2 139 81.3
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.2e-56 221.9 143 78.3
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 3.2e-56 221.9 144 80.6
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 3.2e-56 221.9 131 86.3
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 4.2e-56 221.5 145 77.2
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.5e-56 221.1 144 77.8
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 5.5e-56 221.1 146 76.7
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 5.5e-56 221.1 143 77.6
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 7.2e-56 220.7 144 77.1
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 7.2e-56 220.7 144 77.1
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 7.2e-56 220.7 143 77.6
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 7.2e-56 220.7 144 78.5
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 9.4e-56 220.3 144 77.8
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 9.4e-56 220.3 142 78.9
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 9.4e-56 220.3 147 75.5
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.2e-55 219.9 145 78.6
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.2e-55 219.9 145 77.2
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 2.1e-55 219.2 144 77.1
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 2.1e-55 219.2 146 76.0
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.1e-55 219.2 143 76.2
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 3.6e-55 218.4 144 80.6
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 6.1e-55 217.6 143 77.6
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 6.1e-55 217.6 146 75.3
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 6.1e-55 217.6 147 75.5
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 8.0e-55 217.2 145 76.6
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 8.0e-55 217.2 144 76.4
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 8.0e-55 217.2 148 75.0
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.0e-54 216.9 145 75.2
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.4e-54 216.5 145 75.2
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.3e-54 215.7 143 76.2
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 3.0e-54 215.3 143 79.0
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.2e-54 214.5 144 77.1
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 5.2e-54 214.5 165 69.1
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 6.7e-54 214.2 144 75.0
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 8.8e-54 213.8 152 72.4
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 8.8e-54 213.8 141 77.3
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 1.2e-53 213.4 143 76.9
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.2e-53 213.4 147 73.5
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 2.0e-53 212.6 147 74.1
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 3.3e-53 211.8 147 73.5
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 3.3e-53 211.8 143 74.1
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 4.4e-53 211.5 144 75.0
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 5.7e-53 211.1 143 77.6
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 9.7e-53 210.3 148 75.7
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 9.7e-53 210.3 143 76.2
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.3e-52 209.9 143 74.8
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.7e-52 209.5 146 72.6
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 3.7e-52 208.4 220 55.5
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 3.7e-52 208.4 143 74.1
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.7e-52 208.4 143 74.1
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 8.2e-52 207.2 145 73.1
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 8.2e-52 207.2 144 73.6
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 8.2e-52 207.2 144 73.6
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.1e-51 206.8 146 71.2
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.8e-51 206.1 145 71.7
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 2.4e-51 205.7 147 76.9
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 7.0e-51 204.1 170 64.7
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 7.0e-51 204.1 111 87.4
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.2e-50 203.4 141 73.8
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-50 203.0 117 83.8
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.6e-50 203.0 174 64.4
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.5e-50 201.8 110 86.4
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 5.9e-50 201.1 146 71.2
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 5.9e-50 201.1 145 71.0
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 1.3e-49 199.9 108 88.9
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.7e-49 199.5 147 71.4
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 1.7e-49 199.5 147 71.4
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 2.2e-49 199.1 143 71.3
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 5.0e-49 198.0 143 72.7
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 6.5e-49 197.6 147 70.7
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 1.1e-48 196.8 142 72.5
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 4.7e-47 191.4 115 80.9
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 6.8e-46 187.6 115 78.3
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.8e-43 179.5 204 51.0
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 7.7e-42 174.1 107 83.2
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 5.0e-41 171.4 92 89.1
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 8.6e-41 170.6 109 78.9
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.2e-40 168.3 95 87.4
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.6e-39 166.4 88 90.9
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 6.1e-39 164.5 90 86.7
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 1.2e-37 160.2 111 74.8
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 4.1e-35 151.8 98 78.6
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 2.3e-33 146.0 122 61.5
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.9e-33 145.6 123 57.7
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 6.1e-31 137.9 112 65.2
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.7e-28 128.6 145 52.4
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 1.8e-27 126.3 108 60.2
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 8.6e-25 117.5 63 90.5
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 8.9e-22 107.5 86 58.1
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.5e-21 106.7 60 85.0
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 3.4e-21 105.5 81 61.7
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 3.7e-20 102.1 89 59.6
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.2e-15 87.0 113 46.0
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 6.2e-15 84.7 144 41.7
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.4e-14 83.6 87 47.1
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 7.5e-13 77.8 63 60.3
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.6e-10 70.1 59 61.0
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 2.7e-10 69.3 48 70.8
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 1.3e-09 67.0 66 54.5
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.7e-09 66.6 35 88.6
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 6.6e-09 64.7 54 59.3
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 5.6e-08 61.6 58 62.1
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.6e-07 60.1 72 43.1
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 8.1e-07 57.8 91 45.1
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 1.1e-06 57.4 43 67.4
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.1e-06 57.4 43 67.4
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 6.8e-06 54.7 29 82.8


User provided reference genes

Program Settings