Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.5e-75 286.2 154 100.0
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 2.2e-50 202.6 152 73.7
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 7.5e-43 177.6 150 65.3
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.8e-43 177.2 157 63.1
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 4.9e-42 174.9 147 66.0
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.4e-42 174.5 125 72.0
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.4e-42 174.5 125 72.0
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 8.3e-42 174.1 161 64.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 1.9e-41 172.9 147 66.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 3.2e-41 172.2 149 65.1
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 3.2e-41 172.2 146 65.8
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.2e-41 170.6 157 61.1
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 9.2e-41 170.6 157 61.1
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.7e-40 169.1 128 70.3
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 2.7e-40 169.1 142 66.2
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 3.5e-40 168.7 145 65.5
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 6.0e-40 167.9 118 73.7
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 6.0e-40 167.9 121 71.9
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 6.0e-40 167.9 128 68.8
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 7.8e-40 167.5 120 73.3
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 7.8e-40 167.5 120 73.3
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 1.7e-39 166.4 148 63.5
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 2.3e-39 166.0 122 72.1
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 3.9e-39 165.2 142 62.7
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 5.1e-39 164.9 150 61.3
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 6.6e-39 164.5 120 72.5
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 6.6e-39 164.5 120 72.5
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 8.6e-39 164.1 155 60.6
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 8.6e-39 164.1 146 63.7
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.1e-38 163.7 120 70.0
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 1.5e-38 163.3 151 60.9
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 1.9e-38 162.9 147 61.9
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.9e-38 162.9 121 71.1
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.5e-38 162.5 148 64.2
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.5e-38 162.5 118 72.9
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 4.3e-38 161.8 143 65.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 4.3e-38 161.8 143 65.0
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 5.6e-38 161.4 159 58.5
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.6e-38 161.4 118 72.0
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 5.6e-38 161.4 121 70.2
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 5.6e-38 161.4 143 65.0
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 5.6e-38 161.4 121 71.9
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 7.3e-38 161.0 120 70.0
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 9.5e-38 160.6 119 69.7
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 9.5e-38 160.6 151 62.3
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.2e-37 160.2 144 63.2
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.2e-37 160.2 121 71.9
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.6e-37 159.8 150 61.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.6e-37 159.8 118 71.2
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.6e-37 159.8 150 60.0
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 2.1e-37 159.5 150 62.7
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.1e-37 159.5 156 59.0
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.1e-37 159.5 117 71.8
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 2.8e-37 159.1 150 60.0
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 2.8e-37 159.1 143 63.6
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 3.6e-37 158.7 142 63.4
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 3.6e-37 158.7 154 58.4
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.7e-37 158.3 121 69.4
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 4.7e-37 158.3 151 61.6
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 4.7e-37 158.3 119 69.7
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 6.2e-37 157.9 142 62.7
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 8.1e-37 157.5 116 71.6
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 8.1e-37 157.5 146 61.6
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.1e-36 157.1 117 70.9
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.8e-36 156.4 143 62.2
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.8e-36 156.4 143 63.6
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.3e-36 156.0 143 61.5
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 2.3e-36 156.0 153 61.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.3e-36 156.0 121 66.9
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.3e-36 156.0 117 70.9
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 2.3e-36 156.0 153 57.5
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.3e-36 156.0 118 70.3
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 2.3e-36 156.0 118 70.3
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 2.3e-36 156.0 142 59.9
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 3.1e-36 155.6 121 68.6
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 3.1e-36 155.6 121 68.6
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 3.1e-36 155.6 121 68.6
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 3.1e-36 155.6 121 68.6
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 3.1e-36 155.6 121 66.9
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.1e-36 155.6 117 70.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 3.1e-36 155.6 120 70.0
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.0e-36 155.2 121 68.6
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.0e-36 155.2 128 64.8
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 6.8e-36 154.5 121 67.8
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 8.9e-36 154.1 121 67.8
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.5e-35 153.3 121 65.3
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.0e-35 152.9 118 67.8
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.0e-35 152.9 149 58.4
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 3.4e-35 152.1 142 60.6
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 4.4e-35 151.8 118 67.8
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 5.8e-35 151.4 124 61.3
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.8e-35 151.4 124 61.3
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 7.6e-35 151.0 148 56.1
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 9.9e-35 150.6 143 61.5
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 9.9e-35 150.6 116 67.2
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.7e-34 149.8 122 63.9
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 2.2e-34 149.4 123 61.8
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.9e-34 149.1 121 63.6
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 2.9e-34 149.1 117 66.7
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.9e-34 149.1 151 58.3
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.7e-34 148.7 122 60.7
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 3.7e-34 148.7 143 60.1
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 4.9e-34 148.3 118 65.3
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 6.4e-34 147.9 130 64.6
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 6.4e-34 147.9 125 64.0
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 8.4e-34 147.5 149 53.7
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.4e-33 146.7 135 56.3
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 5.4e-33 144.8 143 60.1
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.6e-32 143.3 120 62.5
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 2.1e-32 142.9 145 55.9
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.7e-32 142.5 143 58.7
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 7.3e-30 134.4 122 57.4
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 2.1e-29 132.9 224 42.4
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.8e-29 132.5 95 73.7
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.1e-28 130.6 94 74.5
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.4e-28 130.2 99 67.7
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.4e-28 130.2 138 52.9
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 3.1e-28 129.0 96 71.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 8.9e-28 127.5 146 56.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 8.9e-28 127.5 117 57.3
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 4.4e-27 125.2 94 70.2
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.9e-26 122.5 146 50.7
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.9e-25 119.8 139 48.2
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 2.4e-25 119.4 87 72.4
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.4e-25 118.2 116 57.8
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 4.6e-24 115.2 121 52.9
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 4.6e-24 115.2 119 50.4
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 4.0e-20 102.1 83 66.3
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.0e-20 102.1 119 47.1
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.2e-19 100.5 119 45.4
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.3e-18 97.1 98 54.1
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.3e-18 97.1 98 54.1
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 3.9e-15 85.5 79 57.0
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.2e-13 78.2 99 47.5
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-12 77.0 107 46.7
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-12 77.0 61 62.3
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.5e-11 73.6 75 54.7
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 8.7e-07 57.8 43 62.8
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 2.5e-06 56.2 70 50.0
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 7.4e-06 54.7 70 48.6
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 7.4e-06 54.7 70 48.6


User provided reference genes

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