Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 2.0e-164 582.4 297 100.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.3e-112 410.2 298 71.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.5e-111 406.8 315 69.5
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 9.5e-111 404.1 311 67.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 9.5e-111 404.1 289 72.0
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.6e-110 403.3 293 71.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.1e-110 402.9 304 70.4
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 4.7e-110 401.7 306 69.0
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.8e-109 399.8 289 71.3
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 8.9e-109 397.5 260 77.7
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 4.4e-108 395.2 252 78.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 4.4e-108 395.2 274 74.5
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.2e-107 392.9 268 74.6
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.4e-106 390.2 252 78.2
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.9e-106 389.8 252 78.2
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.9e-106 389.8 260 75.0
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 3.2e-106 389.0 266 75.9
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 3.2e-106 389.0 272 72.8
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 4.2e-106 388.7 252 75.4
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 5.4e-106 388.3 290 67.2
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.1e-106 387.9 252 75.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.2e-105 387.1 266 75.6
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.2e-105 387.1 266 75.6
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.2e-105 387.1 266 69.9
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.6e-105 386.7 261 73.6
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 1.6e-105 386.7 252 79.4
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.1e-105 386.3 252 79.4
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 4.6e-105 385.2 252 77.0
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 7.8e-105 384.4 307 66.8
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 7.8e-105 384.4 258 76.4
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 1.0e-104 384.0 268 70.9
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.7e-104 383.3 245 78.4
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.3e-104 382.9 245 78.4
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 2.3e-104 382.9 253 75.5
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 3.0e-104 382.5 266 74.4
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 5.1e-104 381.7 251 75.7
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 5.1e-104 381.7 254 74.0
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.1e-103 380.6 245 78.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 4.3e-103 378.6 250 73.2
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 4.3e-103 378.6 285 69.5
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 4.3e-103 378.6 285 69.5
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 5.6e-103 378.3 274 70.4
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 5.6e-103 378.3 254 74.8
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 9.6e-103 377.5 245 76.7
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.2e-102 377.1 254 74.0
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.1e-102 376.3 254 73.6
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.8e-102 375.9 260 71.5
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 3.6e-102 375.6 265 70.2
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 4.7e-102 375.2 283 68.6
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 6.2e-102 374.8 262 72.1
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.1e-101 374.0 264 71.6
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.4e-101 373.6 284 65.8
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.4e-101 373.6 243 77.8
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.8e-101 373.2 286 65.4
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.8e-101 373.2 257 69.3
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 3.1e-101 372.5 292 67.1
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 4.0e-101 372.1 258 71.7
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 2.0e-100 369.8 245 76.3
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.6e-100 369.4 256 71.5
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 3.4e-100 369.0 251 72.9
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.4e-100 368.6 259 68.7
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 7.6e-100 367.9 250 70.8
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 7.6e-100 367.9 301 66.1
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.3e-99 367.1 249 71.1
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 8.4e-99 364.4 246 69.9
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 8.4e-99 364.4 292 65.8
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-98 363.6 248 69.8
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.4e-98 363.6 301 65.4
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.4e-98 362.8 252 71.0
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 3.2e-98 362.5 241 70.1
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 3.2e-98 362.5 241 70.1
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 4.2e-98 362.1 252 71.4
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 4.2e-98 362.1 315 61.9
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 7.1e-98 361.3 246 68.7
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 9.3e-98 360.9 289 64.0
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.2e-97 360.5 310 61.6
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 1.6e-97 360.1 246 69.1
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.7e-97 359.4 279 65.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.6e-97 358.6 241 69.3
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 6.0e-97 358.2 241 69.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 7.8e-97 357.8 305 63.3
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.3e-96 357.1 241 71.0
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 2.3e-96 356.3 265 68.3
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.1e-96 355.1 310 61.6
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.3e-95 352.4 244 67.6
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 3.3e-95 352.4 285 60.4
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.3e-95 352.4 293 59.4
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 3.3e-95 352.4 297 61.6
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.3e-95 352.1 244 67.2
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.3e-94 350.5 220 76.4
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.3e-94 350.5 315 60.0
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.6e-94 350.1 252 65.9
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 2.1e-94 349.7 293 59.0
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.1e-94 349.7 236 73.7
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 3.6e-94 349.0 291 58.8
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 3.6e-94 349.0 291 58.8
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.6e-94 349.0 297 59.6
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 6.2e-94 348.2 236 72.9
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.4e-93 347.1 247 68.8
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.0e-93 345.5 291 58.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 5.3e-93 345.1 223 75.8
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.8e-91 339.0 277 63.5
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 4.9e-91 338.6 257 65.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 6.4e-91 338.2 321 56.1
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 8.4e-91 337.8 236 69.1
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 3.2e-90 335.9 290 60.7
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 9.3e-90 334.3 241 66.0
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.6e-89 333.6 404 48.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.0e-88 330.9 285 60.7
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.3e-88 330.5 254 67.3
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 5.1e-88 328.6 285 63.2
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.1e-88 328.6 294 59.9
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 6.7e-88 328.2 285 60.0
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.9e-87 326.6 275 60.7
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 3.3e-87 325.9 365 51.8
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.3e-87 325.5 229 70.3
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.1e-86 323.2 220 74.5
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.0e-85 317.8 241 66.8
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 2.0e-84 316.6 239 66.9
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.2e-82 308.9 252 62.7
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.2e-81 307.4 221 66.1
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.1e-81 306.6 253 63.2
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.9e-81 304.7 321 54.5
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.0e-80 304.3 299 53.2
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 3.9e-80 302.4 253 62.5
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 6.7e-80 301.6 252 62.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.7e-80 301.2 347 51.6
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.3e-79 298.9 264 63.6
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 4.0e-77 292.4 239 60.3
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.9e-75 285.4 226 65.0
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.5e-74 283.1 238 58.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.5e-68 263.8 250 51.6
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 7.7e-68 261.5 221 58.8
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.0e-63 246.9 259 47.5
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-61 241.1 225 59.6
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.8e-61 240.4 165 68.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.5e-60 237.3 397 39.0
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 3.6e-57 226.1 222 50.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 4.7e-57 225.7 236 46.6
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 3.0e-56 223.0 241 47.3
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.5e-55 220.7 131 81.7
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 8.2e-54 214.9 143 75.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.8e-51 206.1 296 43.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 5.5e-50 202.2 135 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 6.3e-46 188.7 189 50.3
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 6.1e-41 172.2 125 64.0
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.2e-28 131.3 118 53.4
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 5.7e-23 112.5 107 46.7
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 3.2e-21 106.7 63 82.5
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.2e-20 104.8 75 64.0
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.0e-15 87.4 69 59.4
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 4.4e-15 86.3 72 58.3
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.6e-12 77.8 70 44.3
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 4.6e-12 76.3 183 32.8
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 7.3e-10 68.9 52 61.5
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.1e-08 65.1 103 38.8
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 1.1e-08 65.1 207 27.1
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 1.8e-08 64.3 258 25.6
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 4.0e-08 63.2 103 35.9
Aqoxy3G02205 Aquilegia oxysepala HOM05D002234 ORTHO05D002254 5.2e-08 62.8 199 28.6
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 5.2e-08 62.8 88 51.1
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 6.8e-08 62.4 206 28.2
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 6.8e-08 62.4 255 26.7
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 8.9e-08 62.0 200 29.5
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 8.9e-08 62.0 50 64.0
Sed0016690 Sechium edule HOM05D002234 ORTHO05D002254 1.5e-07 61.2 247 24.3
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 3.4e-07 60.1 199 27.6
VMungo1215G0334 Vigna mungo HOM05D002234 ORTHO05D002254 5.8e-07 59.3 207 27.1
AL4G31540 Arabidopsis lyrata HOM05D002234 ORTHO05D002254 1.7e-06 57.8 196 26.5
Lj2A233G30 Lonicera japonica HOM05D002234 ORTHO05D002254 1.7e-06 57.8 201 28.9
AT2G35490 Arabidopsis thaliana HOM05D002234 ORTHO05D002254 2.9e-06 57.0 203 26.1
Carub.0004s1718 Capsella rubella HOM05D002234 ORTHO05D002254 3.7e-06 56.6 196 26.0
Thhalv10016800m.g Eutrema salsugineum HOM05D002234 ORTHO05D002254 4.9e-06 56.2 196 26.0
Sp4g17710 Schrenkiella parvula HOM05D002234 ORTHO05D002254 4.9e-06 56.2 196 26.5
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 6.4e-06 55.8 53 60.4
PSO063G3420 Papaver somniferum HOM05D002234 ORTHO05D002254 8.3e-06 55.5 209 26.8


User provided reference genes

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