Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 3.9e-58 228.0 122 100.0
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 3.3e-17 92.0 88 59.1
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 3.6e-16 88.6 83 60.2
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 8.1e-16 87.4 97 52.6
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 8.1e-16 87.4 90 61.1
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 5.3e-15 84.7 87 52.9
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 5.3e-15 84.7 63 71.4
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 5.3e-15 84.7 63 71.4
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.2e-14 83.6 63 69.8
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.5e-14 83.2 80 62.5
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 2.6e-14 82.4 62 72.6
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 2.6e-14 82.4 113 48.7
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 2.6e-14 82.4 113 48.7
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 2.6e-14 82.4 113 48.7
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 2.6e-14 82.4 113 48.7
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 2.6e-14 82.4 113 48.7
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 2.6e-14 82.4 77 61.0
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 3.4e-14 82.0 65 70.8
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 3.4e-14 82.0 65 64.6
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 3.4e-14 82.0 65 64.6
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 4.5e-14 81.6 76 61.8
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 5.8e-14 81.3 117 45.3
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 5.8e-14 81.3 122 49.2
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 5.8e-14 81.3 77 58.4
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 7.6e-14 80.9 63 66.7
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 7.6e-14 80.9 86 57.0
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 9.9e-14 80.5 113 47.8
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 9.9e-14 80.5 113 47.8
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 9.9e-14 80.5 65 64.6
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 9.9e-14 80.5 65 64.6
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 9.9e-14 80.5 65 70.8
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.3e-13 80.1 89 49.4
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 1.3e-13 80.1 90 54.4
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 1.3e-13 80.1 62 71.0
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.7e-13 79.7 65 61.5
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 2.2e-13 79.3 65 63.1
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.2e-13 79.3 74 59.5
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.2e-13 79.3 65 63.1
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.2e-13 79.3 65 63.1
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.2e-13 79.3 100 51.0
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 2.2e-13 79.3 72 58.3
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 2.2e-13 79.3 62 69.4
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 3.8e-13 78.6 127 43.3
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 3.8e-13 78.6 124 43.5
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 4.9e-13 78.2 114 47.4
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 4.9e-13 78.2 62 67.7
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.1e-12 77.0 113 46.0
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-12 77.0 113 46.0
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 1.1e-12 77.0 65 56.9
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 1.1e-12 77.0 65 61.5
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.1e-12 77.0 65 60.0
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.4e-12 76.6 62 64.5
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.9e-12 76.3 112 46.4
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.4e-12 75.9 81 56.8
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 3.2e-12 75.5 120 46.7
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 5.4e-12 74.7 114 46.5
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 7.1e-12 74.3 70 57.1
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 9.3e-12 73.9 75 58.7
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 9.3e-12 73.9 74 64.9
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 9.3e-12 73.9 73 54.8
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 1.2e-11 73.6 125 43.2
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.2e-11 73.6 63 58.7
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 1.6e-11 73.2 55 69.1
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 2.1e-11 72.8 114 44.7
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 2.1e-11 72.8 114 44.7
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.7e-11 72.4 62 62.9
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 2.7e-11 72.4 59 64.4
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 3.5e-11 72.0 68 57.4
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 4.6e-11 71.6 113 45.1
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 4.6e-11 71.6 113 45.1
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 4.6e-11 71.6 111 50.5
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 6.0e-11 71.2 118 43.2
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 6.0e-11 71.2 108 43.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 7.9e-11 70.9 70 52.9
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.8e-10 69.7 121 43.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.8e-10 69.7 71 56.3
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.8e-10 69.7 71 56.3
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 2.3e-10 69.3 65 60.0
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 3.9e-10 68.6 51 66.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 3.9e-10 68.6 53 66.0
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 3.9e-10 68.6 53 66.0
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 3.9e-10 68.6 60 58.3
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 3.9e-10 68.6 62 62.9
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 5.1e-10 68.2 113 46.0
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 6.7e-10 67.8 104 46.2
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 8.7e-10 67.4 121 40.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 8.7e-10 67.4 121 40.5
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.1e-09 67.0 121 41.3
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.9e-09 66.2 113 43.4
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 2.5e-09 65.9 119 43.7
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.5e-09 65.9 120 45.0
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 2.5e-09 65.9 119 43.7
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 2.5e-09 65.9 119 43.7
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.5e-09 65.9 91 47.3
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 5.6e-09 64.7 107 43.9
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 5.6e-09 64.7 119 42.9
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 5.6e-09 64.7 107 43.9
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 7.4e-09 64.3 62 59.7
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 9.6e-09 63.9 119 43.7
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.8e-08 62.4 64 56.2
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.8e-08 61.6 65 53.8
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 4.8e-08 61.6 119 43.7
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.8e-08 61.6 118 41.5
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 6.2e-08 61.2 107 43.9
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 6.2e-08 61.2 107 43.9
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 6.2e-08 61.2 107 43.9
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 5.8e-06 54.7 67 53.7
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 7.6e-06 54.3 48 47.9
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 7.6e-06 54.3 60 50.0
SEGI_27334 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 1.0e-05 53.9 100 32.0


User provided reference genes

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