Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 0.0e+00 2738.0 1367 100.0
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1078.2 1388 44.7
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 2.0e-296 1023.1 1253 47.5
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 1.6e-290 1003.4 1408 45.2
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 4.5e-288 995.3 1394 44.1
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 1.9e-275 953.4 1402 42.7
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 7.6e-272 941.4 1405 41.1
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 5.0e-271 938.7 1404 41.3
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 9.7e-267 924.5 1397 41.4
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 5.9e-264 915.2 1404 40.7
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 6.1e-261 905.2 1398 40.2
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 5.1e-260 902.1 1398 39.8
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.2e-258 896.7 1335 41.9
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 7.7e-256 888.3 1399 38.5
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 5.0e-255 885.6 1399 39.7
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 1.9e-254 883.6 1383 39.5
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 2.1e-253 880.2 1421 38.6
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 1.0e-247 861.3 1399 38.9
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 2.9e-247 859.8 1389 39.2
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 3.8e-247 859.4 1423 38.7
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 9.7e-243 844.7 1377 38.2
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 3.7e-242 842.8 1404 38.7
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 7.7e-240 835.1 1402 38.4
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.3e-239 834.3 1397 38.4
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 2.9e-239 833.2 1468 37.4
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 3.2e-238 829.7 1380 38.6
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 1.0e-236 824.7 1439 38.1
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 5.2e-236 822.4 1399 37.9
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 5.2e-236 822.4 1396 38.0
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.4e-235 819.7 1402 38.3
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 1.7e-234 817.4 1440 37.9
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 2.2e-234 817.0 1389 38.8
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 7.7e-232 808.5 1402 37.4
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 1.2e-224 784.6 1412 38.1
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.9e-224 782.3 1427 36.6
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 8.6e-223 778.5 1383 36.8
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 8.9e-220 768.5 1391 37.2
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 6.4e-218 762.3 1409 36.6
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 2.6e-211 740.3 1406 36.4
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 4.4e-211 739.6 1371 36.3
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 9.8e-211 738.4 1402 36.4
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 8.3e-210 735.3 1390 36.3
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 1.4e-209 734.6 1388 36.1
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 5.4e-209 732.6 1408 35.9
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 2.0e-208 730.7 1397 36.6
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 6.0e-208 729.2 1405 35.9
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 3.9e-207 726.5 1177 38.4
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 1.5e-206 724.5 1383 35.6
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.2e-205 721.5 1383 35.5
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 3.6e-205 719.9 1395 35.4
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 4.3e-198 696.4 1149 38.5
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 1.2e-197 694.9 1411 35.5
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 6.2e-197 692.6 1199 37.4
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 5.8e-195 686.0 1377 35.1
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 3.2e-193 680.2 1346 35.8
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 6.6e-191 672.5 1380 34.9
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 9.6e-190 668.7 1303 35.8
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 2.1e-189 667.5 1436 35.0
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 1.5e-187 661.4 1396 34.0
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 2.2e-186 657.5 1393 33.8
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 8.7e-183 645.6 1370 34.2
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 4.9e-178 629.8 1235 36.8
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 1.1e-177 628.6 1402 33.2
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 2.7e-176 624.0 1367 33.9
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 2.7e-176 624.0 1368 34.0
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 3.5e-176 623.6 1396 33.6
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 2.3e-175 620.9 1365 33.2
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 3.0e-175 620.5 1371 33.3
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 6.7e-175 619.4 1373 33.7
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 1.5e-174 618.2 1367 33.8
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.5e-174 618.2 1372 33.9
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 4.3e-174 616.7 1366 34.0
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 9.0e-172 609.0 1382 33.6
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 1.5e-171 608.2 1500 32.9
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.9e-170 604.0 1091 37.1
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 3.7e-157 560.5 1228 34.0
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 8.5e-154 549.3 1403 31.0
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 7.4e-150 536.2 1384 31.8
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 1.2e-144 518.8 1513 29.9
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 6.7e-143 513.1 1381 30.8
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 4.7e-136 490.3 1020 33.5
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 1.3e-125 455.7 817 37.0
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 2.7e-123 448.0 985 33.2
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 8.0e-120 436.4 1397 28.4
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 7.5e-118 429.9 936 33.9
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 3.8e-114 417.5 415 51.1
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 9.2e-108 396.4 833 32.9
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 5.8e-94 350.5 474 43.2
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 3.2e-92 344.7 413 47.2
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.1e-90 337.4 358 50.6
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 5.6e-89 334.0 442 42.1
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 2.7e-75 288.5 384 44.8
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.2e-72 279.6 758 30.9
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.8e-72 278.5 366 45.1
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 7.1e-68 263.8 274 50.7
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 7.1e-68 263.8 375 42.7
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 1.1e-65 256.5 640 30.5
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 1.9e-65 255.8 472 37.3
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 4.2e-60 238.0 407 38.1
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 2.1e-59 235.7 376 39.9
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 4.3e-57 228.0 1334 22.9
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.1e-56 225.7 249 49.0
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.6e-51 209.5 678 28.0
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.3e-42 179.9 210 47.6
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.8e-42 179.5 266 42.5
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 8.7e-42 177.2 563 28.4
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 5.7e-41 174.5 538 26.6
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 1.3e-40 173.3 424 30.0
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 3.4e-38 165.2 601 26.3
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 3.4e-38 165.2 122 61.5
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 2.2e-32 146.0 272 33.8
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.4e-31 143.3 209 42.6
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.1e-28 133.7 179 45.3
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 1.9e-28 132.9 415 30.8
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 6.3e-24 117.9 627 23.4
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.1e-20 107.1 212 33.0
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 2.1e-19 102.8 256 31.2
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 4.7e-19 101.7 165 38.2
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 4.8e-16 91.7 227 33.5
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.4e-15 90.1 191 29.3
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.8e-15 89.7 271 28.0
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.7e-13 83.2 56 69.6
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 3.2e-12 79.0 432 23.1
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.8e-10 73.2 51 68.6
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 4.8e-08 65.1 487 21.8
Solyc07g021115.1 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.6e-06 60.1 79 44.3


User provided reference genes

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