Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 0.0e+00 1470.7 761 100.0
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.6e-279 964.9 778 66.7
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 1.1e-272 943.3 808 63.7
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 2.5e-272 942.2 735 68.4
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.0e-271 937.2 775 66.2
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.0e-266 922.5 780 63.5
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 8.6e-265 917.1 775 63.7
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 7.3e-264 914.1 778 64.5
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 8.0e-263 910.6 775 63.2
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.6e-261 905.6 774 63.2
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.4e-259 899.8 776 63.1
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.1e-258 896.0 806 60.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 3.5e-258 895.2 775 63.6
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 5.1e-257 891.3 775 62.5
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.5e-256 889.0 775 63.1
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 7.3e-256 887.5 776 61.6
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.2e-255 886.7 776 62.0
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 3.6e-255 885.2 776 62.0
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 5.2e-254 881.3 775 61.7
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.6e-253 879.0 778 62.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 4.9e-252 874.8 775 60.8
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.2e-251 872.1 834 59.2
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 3.5e-250 868.6 777 61.0
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.6e-250 868.2 805 60.5
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 4.3e-248 861.7 777 61.3
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 3.6e-247 858.6 778 59.9
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 4.7e-247 858.2 776 60.1
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 2.4e-246 855.9 778 59.9
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 3.1e-246 855.5 781 59.5
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 6.8e-246 854.4 778 59.9
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.4e-245 851.7 776 60.4
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 3.8e-244 848.6 777 60.7
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 1.1e-243 847.0 772 59.3
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.8e-242 840.9 807 57.9
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 3.0e-241 839.0 801 57.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 5.1e-241 838.2 775 59.9
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 8.7e-241 837.4 776 58.2
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 8.7e-241 837.4 777 59.3
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 7.3e-240 834.3 780 58.5
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.6e-239 833.2 751 62.2
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.6e-239 833.2 774 58.8
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 4.7e-239 831.6 776 58.6
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 6.2e-239 831.2 776 59.8
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.8e-238 829.7 775 59.9
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 5.3e-238 828.2 777 58.6
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 9.0e-238 827.4 776 58.2
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 2.6e-237 825.9 775 59.9
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 2.9e-236 822.4 770 59.0
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.9e-235 819.7 803 56.4
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.9e-235 819.7 776 57.9
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.2e-235 818.9 771 58.2
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 4.2e-235 818.5 778 57.6
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 9.3e-235 817.4 777 57.7
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 2.1e-234 816.2 776 57.6
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.7e-233 813.1 775 59.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.1e-232 810.4 764 58.2
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.1e-232 810.4 776 57.3
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.9e-232 809.7 846 55.3
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 3.3e-232 808.9 762 58.8
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 4.3e-232 808.5 766 56.8
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 9.6e-232 807.4 776 58.1
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.1e-231 806.2 762 58.8
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 2.8e-231 805.8 770 57.4
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 5.3e-230 801.6 776 57.7
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.5e-229 800.0 774 57.4
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.8e-229 798.1 771 57.6
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 1.1e-227 793.9 790 55.6
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 8.7e-225 784.3 927 51.2
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 5.6e-224 781.6 784 56.4
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.2e-220 769.6 804 54.6
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.4e-219 766.9 720 58.5
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 6.5e-212 741.5 718 58.1
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 8.4e-212 741.1 785 53.2
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 9.3e-211 737.6 792 51.9
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 6.0e-210 734.9 788 53.3
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.8e-209 733.4 775 53.5
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 5.0e-204 715.3 761 53.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 6.5e-204 714.9 765 53.3
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 8.5e-204 714.5 758 52.6
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.4e-203 713.8 760 53.0
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.9e-203 713.4 776 52.6
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 4.2e-203 712.2 775 52.9
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 9.4e-203 711.1 770 52.6
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 3.3e-200 702.6 798 51.3
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.8e-199 699.5 770 51.0
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.8e-199 699.5 765 52.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.4e-198 697.2 784 50.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 2.3e-193 679.9 767 49.8
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-188 664.5 668 57.0
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 9.1e-182 641.3 781 49.7
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 3.2e-179 632.9 773 47.9
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 8.8e-177 624.8 448 71.9
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 6.3e-175 618.6 617 56.9
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 8.5e-172 608.2 713 49.6
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 2.4e-166 590.1 771 45.0
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 5.4e-166 589.0 739 48.4
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.7e-164 583.9 780 46.2
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.7e-164 583.9 780 46.2
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.7e-164 583.9 780 46.2
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 8.6e-164 581.6 609 55.7
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 5.4e-158 562.4 619 53.2
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 7.8e-157 558.5 856 40.8
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 7.0e-150 535.4 413 65.6
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.3e-147 526.6 568 53.7
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.7e-143 514.2 511 58.3
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 1.5e-139 501.1 615 46.2
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 7.3e-139 498.8 750 41.5
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.1e-137 495.0 457 56.0
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 9.6e-131 471.9 500 56.6
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 2.6e-128 463.8 554 51.4
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 3.5e-109 400.2 274 71.2
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.9e-102 377.9 573 41.9
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 2.9e-87 327.4 537 42.5
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.1e-75 288.9 368 44.6
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 1.1e-70 272.3 208 62.5
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 3.2e-70 270.8 239 62.3
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.8e-63 247.3 173 69.9
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.7e-55 221.9 143 71.3
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.8e-49 201.8 121 81.8
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 3.5e-48 197.6 142 64.8
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.8e-47 194.1 144 63.9
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.7e-42 178.7 143 60.1
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 2.2e-42 178.3 179 54.7
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 3.4e-35 154.5 129 61.2
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.4e-33 147.1 114 68.4
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 4.7e-29 134.0 85 72.9
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-25 122.5 171 38.6
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 4.6e-24 117.5 91 62.6
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.8e-24 116.7 74 75.7
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 6.6e-23 113.6 95 60.0
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 3.3e-22 111.3 93 52.7
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 3.3e-22 111.3 93 52.7
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.4e-20 105.9 726 21.9
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 2.0e-19 102.1 227 30.4
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 3.4e-19 101.3 147 37.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 7.3e-14 83.6 545 20.9
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.0e-11 75.5 217 29.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-09 68.6 58 55.2
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.2e-09 67.8 47 70.2
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 1.1e-06 59.7 57 54.4
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 1.9e-06 58.9 70 47.1


User provided reference genes

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