Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.7e-109 399.4 220 100.0
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 7.2e-55 218.0 118 100.0
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 2.0e-52 209.9 208 57.7
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 2.0e-52 209.9 218 53.7
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 7.4e-52 208.0 223 55.6
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.7e-51 205.7 223 55.2
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 4.8e-51 205.3 213 55.9
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.1e-50 204.1 209 54.5
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 5.3e-50 201.8 209 56.0
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 7.0e-50 201.4 208 52.9
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 9.1e-50 201.1 222 54.1
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.6e-49 200.3 215 54.9
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.5e-49 199.1 209 51.2
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 3.5e-49 199.1 209 54.5
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 7.7e-49 198.0 209 54.5
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 8.5e-48 194.5 212 52.4
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.9e-47 193.4 206 55.8
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.5e-47 193.0 207 52.7
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 4.2e-47 192.2 209 54.5
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 7.2e-47 191.4 179 63.1
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 7.2e-47 191.4 213 53.1
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 9.4e-47 191.0 213 51.6
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 1.6e-46 190.3 215 52.1
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 2.7e-46 189.5 207 51.2
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 3.6e-46 189.1 219 53.4
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 6.1e-46 188.3 207 50.2
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 8.0e-46 188.0 204 53.9
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 8.0e-46 188.0 209 51.7
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.8e-45 186.8 207 50.2
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 3.0e-45 186.0 207 50.2
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 4.0e-45 185.7 215 50.2
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 4.0e-45 185.7 207 50.2
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 5.2e-45 185.3 207 50.2
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 5.2e-45 185.3 207 49.3
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 8.8e-45 184.5 202 53.5
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 8.8e-45 184.5 205 50.7
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 8.8e-45 184.5 209 53.1
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 1.2e-44 184.1 207 49.8
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 1.5e-44 183.7 209 50.7
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.0e-44 183.3 207 50.2
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.0e-44 183.3 223 48.9
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 2.6e-44 183.0 223 51.6
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 2.6e-44 183.0 230 48.3
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 3.3e-44 182.6 211 50.7
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 3.3e-44 182.6 213 49.8
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 4.4e-44 182.2 209 50.2
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 7.5e-44 181.4 209 50.2
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 7.5e-44 181.4 216 49.5
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 9.7e-44 181.0 212 50.5
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.7e-43 180.3 207 51.2
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 2.8e-43 179.5 219 51.1
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.8e-43 178.7 204 50.0
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 1.1e-42 177.6 221 48.0
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.1e-42 177.6 210 50.0
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 1.1e-42 177.6 216 47.2
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.8e-42 176.8 210 50.5
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.8e-42 176.8 207 50.2
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.4e-42 176.4 209 50.7
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 4.1e-42 175.6 221 47.5
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 4.1e-42 175.6 219 50.7
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 5.3e-42 175.3 196 49.5
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 7.0e-42 174.9 209 52.6
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 9.1e-42 174.5 209 51.2
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.6e-41 173.7 209 49.8
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.0e-41 173.3 207 47.8
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.0e-41 173.3 207 47.8
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 2.7e-41 172.9 208 48.6
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 2.7e-41 172.9 206 49.5
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.7e-41 172.9 212 48.1
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 2.7e-41 172.9 205 49.8
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 3.5e-41 172.6 211 48.3
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 3.5e-41 172.6 221 47.1
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 4.5e-41 172.2 207 49.3
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 7.7e-41 171.4 208 48.6
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 7.7e-41 171.4 161 62.1
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 7.7e-41 171.4 221 46.2
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.0e-40 171.0 210 48.1
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 2.9e-40 169.5 210 47.6
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 3.8e-40 169.1 203 45.8
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.8e-40 169.1 204 50.0
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 5.0e-40 168.7 211 45.5
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 5.0e-40 168.7 206 49.0
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.1e-39 167.5 208 47.6
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.9e-39 166.8 198 48.0
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 2.5e-39 166.4 217 46.1
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 3.2e-39 166.0 205 46.8
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.2e-39 166.0 212 46.7
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 5.5e-39 165.2 208 45.7
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 9.4e-39 164.5 210 45.2
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 9.4e-39 164.5 211 45.0
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 9.4e-39 164.5 212 49.1
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 2.1e-38 163.3 210 46.2
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 2.1e-38 163.3 206 51.0
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 2.3e-37 159.8 209 43.5
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 6.8e-37 158.3 207 44.4
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 1.5e-36 157.1 207 45.4
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 3.4e-36 156.0 211 44.5
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 4.4e-36 155.6 213 44.1
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 4.4e-36 155.6 197 45.7
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.3e-35 154.1 213 46.5
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.8e-35 152.9 202 47.5
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.1e-34 151.0 208 43.3
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.4e-34 150.6 204 45.1
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 5.4e-34 148.7 207 43.0
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 7.0e-34 148.3 206 43.7
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 9.1e-34 147.9 209 42.1
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.2e-33 147.5 207 42.0
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.6e-33 147.1 203 44.3
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 5.0e-32 142.1 201 42.3
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 8.5e-32 141.4 210 42.9
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 3.2e-31 139.4 200 45.0
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.2e-31 139.0 214 40.7
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 9.5e-31 137.9 198 46.5
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.6e-30 137.1 213 43.2
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 6.1e-30 135.2 209 39.2
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.0e-30 134.8 132 54.5
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 5.2e-29 132.1 133 56.4
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.2e-28 131.0 211 40.3
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 2.6e-28 129.8 199 44.7
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.3e-27 127.5 210 40.0
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 1.3e-27 127.5 211 37.9
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 3.7e-27 125.9 211 36.5
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 8.3e-27 124.8 197 38.6
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.1e-26 124.4 211 37.0
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.1e-26 124.4 210 41.4
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.4e-26 124.0 210 38.6
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 2.4e-26 123.2 208 39.9
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 4.1e-26 122.5 197 38.1
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 7.0e-26 121.7 192 40.1
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 7.0e-26 121.7 192 40.1
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 7.0e-26 121.7 215 36.3
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 9.2e-26 121.3 212 36.3
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.6e-25 120.6 208 38.9
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.6e-25 120.6 202 38.1
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 2.7e-25 119.8 192 40.1
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 2.7e-25 119.8 192 40.1
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 3.5e-25 119.4 196 38.3
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 4.5e-25 119.0 149 44.3
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 5.9e-25 118.6 194 38.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 5.9e-25 118.6 183 41.0
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 5.0e-24 115.5 202 37.1
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.5e-23 114.0 212 38.7
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 1.9e-23 113.6 202 35.6
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 2.5e-23 113.2 141 46.8
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 5.6e-23 112.1 194 38.1
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 9.5e-23 111.3 206 38.3
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 1.5e-20 104.0 208 36.5
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 2.4e-18 96.7 210 35.2
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 7.0e-18 95.1 207 35.7
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.6e-14 84.0 117 41.0
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 6.2e-14 82.0 182 35.2
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 8.1e-06 55.1 104 44.2
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 8.1e-06 55.1 82 36.6


User provided reference genes

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